G16332


Basic Information

Item Value
gene id G16332
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4950689 ~ 4957842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18272
CAATCCACTCCTTTATTTCTCTTGGGTATAAATTGTACAAACAATAGTGTAGATCAAATCAGCAACATCTTATTGTGACCCAGTCCCTGATCTCCATCTACATCGTCAATTCCATAATAGCATTGACAATGTCGTTATTGTTATTCTTCAGTGCACGCACAGCCTTTGCCCTGGATACATTGGCCTGTGACATGACCAGCTCAATGTCCTTGACTTCCACTCCGGTCTCATCAACCTCTTCCTCTTCGCTCTCCTCCTGTACTGTGGGCGTCTGTGTGTTTTCCTGGATGTTTGAAACGGCTTCTCCTTGAACCTTGAACTTCTCTGCAGCTGCTAACTGAGCTTGCTGTGACAGGTCTTCAATCTTGGCCTCACCGAAGACAATGTAAGTATCTGAAGCTGGACTTTTGTAGACATCTGGTTTGGTGATGACAAAGAGAATGTTCTTGGACTTGCGAATGGTTACCCTGGTAACACCAGCAACTTGTCTCAACCCCAATTTGGACATGGCCTTCCTGGCTTTCTTTTCACTTCTGCTTTGTTTTGCTTTGCTGACAGGTTCTTCATCGATTTCAGCTGCAGCTGCAAGCTGTGCCTGCTGTGTCTGTGTCTGTGCAGAGTCCTGCTCCTCCAGTTCAGGAACAGATTCGTCACTGTCAGATTCAGTGCCGGACCCCGTCTCAGCCTGTGGCTGCTGCATCTCCTGCTCTGTAACAGGGACAGTTTCTGTGGCTTCGCCTGGCATTCTGGATAGTTCAGGGCACAGGATCCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU18272 True 773 TUCP 0.48 8 4950689 4957842

Neighbor

gene id symbol gene type direction distance location
CI01000001_04944573_04950116 TFIP11 coding downstream 573 4944485 ~ 4950116 (-)
CI01000001_04846242_04846925 BHLHE23 coding downstream 102989 4845807 ~ 4847700 (-)
CI01000001_04757377_04759421 DNAJC5, DNAJC5.L, DNAJC5AB, DNAJC5AA coding downstream 191182 4756419 ~ 4759507 (-)
CI01000001_04746153_04754209 NA coding downstream 196480 4746133 ~ 4754209 (-)
CI01000001_04732844_04744038 NA coding downstream 206651 4732844 ~ 4744038 (-)
CI01000001_05001068_05003302 NA coding upstream 42699 5000541 ~ 5003417 (-)
CI01000001_05003724_05017009 PM20D1.2, PM20D1 coding upstream 45813 5003655 ~ 5017009 (-)
CI01000001_05017930_05027838 NA coding upstream 59678 5017520 ~ 5027838 (-)
CI01000001_05062950_05065565 NA coding upstream 104455 5062297 ~ 5065565 (-)
CI01000001_05155976_05158742 NA coding upstream 198079 5155921 ~ 5158742 (-)
G16373 NA non-coding downstream 18716 4931758 ~ 4931973 (-)
G16371 NA non-coding downstream 23741 4926685 ~ 4926948 (-)
G16367 NA non-coding downstream 24990 4914168 ~ 4925699 (-)
G15729 NA non-coding downstream 156020 4792475 ~ 4794669 (-)
G15646 NA non-coding downstream 246744 4701556 ~ 4703945 (-)
G16375 NA non-coding upstream 1479 4959321 ~ 4960791 (-)
G16376 NA non-coding upstream 4625 4962467 ~ 4964363 (-)
G16378 NA non-coding upstream 6615 4964457 ~ 4965516 (-)
G16377 NA non-coding upstream 8227 4966069 ~ 4970361 (-)
G16379 NA non-coding upstream 13471 4971313 ~ 4972241 (-)
G15736 NA other downstream 149294 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 222482 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 472544 4468209 ~ 4523431 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 551174 4392314 ~ 4399804 (-)
CI01000001_02258523_02262621 NA other downstream 2653477 2258442 ~ 2263103 (-)
G16462 NA other upstream 264935 5222777 ~ 5229585 (-)
G16664 NA other upstream 1386262 6344104 ~ 6347955 (-)
G16753 NA other upstream 1626638 6583054 ~ 6615589 (-)
G17789 NA other upstream 1879683 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1978235 6931621 ~ 6937231 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008886 LOC107737655 coding CM030126.1 CM030126.1 13906302 ~ 13921627 (+)