G16753


Basic Information

Item Value
gene id G16753
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6583054 ~ 6615589 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18773
CTCGTCGATTGCTGAACCAAACCTGTACTCTGGCCTCGGTAAGCTTGGTTCTCTGGGCTAGCTCCTCTCTGGTGTAGATGTCTGGGTAGTGTGTCCTTTCGAAGGCCTTCTCCAGCTCTTCCAGCTGCTCGGCTGTGAAAGTGGTCCGACTGCGCCTCTGCTTCCTCTTCAGGGGCAGGTCCGGTTCAGACTCGACGTCCGAGCCTTCGTCCATTCGACCTTTGTCTCCCAGTATGCCGTCAATGCTGTGCTTGGTTTTTTTCTCCCCACTGTCATCTTTTTTGTCGCAATCGTCCTCATCGTCTTTTTTGCCGAAACGCGCACGTAGAACCCGGCTGATAGAACTTACAGATGCGGCCTCACCTGAGGGAACTGTACTTCTGTCACACACACCGTCCTTCAACAGTTTGTCCCGAATCTCCCAACTGAACATGCCGGGATTTTCGCGCTTGTATTCTTCGATTCGTTTTTCCACGTCAGGTGTTGCCACCTGTCTGGGTTTACTTCCTCCTATTGCTCCCGGACGGATTGAGCCAGTTTCTTGATACCGGCAGAGGATTTTGGACACACAACCGTGGGAAACGCGAAGTTGTCGGGAGATCACGCAGGGACGGATGCCGTGGTGAGCCATTTCAACAATTTTGTGACGGATATGATTTGGCAAAGGCCTGCCATTGATGAATACTCCGCCAAGCTGATTCACTCGACCTTGACCCAGAGGAGTTGAAACTTCCAAGGGGAATCCAGTGCGGGGATAGTTCTGTCCTGGAGCCGGTCGCATCATTCGCGGTACTGTTCCCGGTAAAGATGACATTCTACTTTTAATAAATGACGAGGCACAGTAAGGCTGATGATTAAACTGCGAAAGCAAGTCCAGACTTGTTGATGAATGTTTCCTTAATGACTAAAAATGCACTTAAGTCCTCTTTTCGAAAAGGGGAAAATAAAAAAATGAAAAATTGATATCCAGTCAGACTATCGCGGGGATGTGAAACCTCCAAAAAAATCAAACAAAGATAAACACTGTCGTTTCGTGCGGAGGGGGGCATGAGCAAAATAACCACCGCAAGAACAAGATGCAGCGCGCGCCAGGGAGGGGGTACTCCAAACGCTCTCGAGTGAACAAAGGTTACTTAATTCTTTGCAGTGTTTTCTTAAAAGGTCTGATAGTTTTGGATGACAAAGTCTGCTTAGGGGTTGGGAGTAGTTGAAGTGGATAACTTTAGCGCGCGGTGTAGGAGGGGTG
>TU18776
CTCGTCGATTGCTGAACCAAACCTGTACTCTGGCCTCGGTAAGCTTGGTTCTCTGGGCTAGCTCCTCTCTGGTGTAGATGTCTGGGTAGTGTGTCCTTTCGAAGGCCTTCTCCAGCTCTTCCAGCTGCTCGGCTGTGAAAGTGGTCCGACTGCGCCTCTGCTTCCTCTTCAGGGGCAGGTCCGGTTCAGACTCGACGTCCGAGCCTTCGTCCATTCGACCTTTGTCTCCCAGTATGCCGTCAATGCTGTGCTTGGTTTTTTTCTCCCCACTGTCATCTTTTTTGTCGCAATCGTCCTCATCGTCTTTTTTGCCGAAACGCGCACGTAGAACCCGGCTGATAGAACTTACAGATGCGGCCTCACCTGAGGGAACTGTACTTCTGTCACACACACCGTCCTTCAACAGTTTGTCCCGAATCTCCCAACTGAACATGCCGGGATTTTCGCGCTTGTATTCTTCGATTCGTTTTTCCACGTCAGGTGTTGCCACCTGTCTGGGTTTACTTCCTCCTATTGCTCCCGGACGGATTGAGCCAGTTTCTTGATACCGGCAGAGGATTTTGGACACACAACCGTGGGAAACGCGAAGTTGTCGGGAGATCACGCAGGGACGGATGCCGTGGTGAGCCATTTCAACAATTTTGTGACGGATATGATTTGGCAAAGGCCTGCCATTGATGAATACTCCGCCAAGCTGATTCACTCGACCTTGACCCAGAGGAGTTGAAACTGCGGTAGAGAAATG
>TU18774
CTCGTCGATTGCTGAACCAAACCTGTACTCTGGCCTCGGTAAGCTTGGTTCTCTGGGCTAGCTCCTCTCTGGTGTAGATGTCTGGGTAGTGTGTCCTTTCGAAGGCCTTCTCCAGCTCTTCCAGCTGCTCGGCTGTGAAAGTGGTCCGACTGCGCCTCTGCTTCCTCTTCAGGGGCAGGTCCGGTTCAGACTCGACGTCCGAGCCTTCGTCCATTCGACCTATCAGAGATAATAGAGAACGAGAAAACTGAGTGCGATGTGAACGCCACTATAGCAGTATCAGACATCTACTTTCCATAGAGACGCACTTCCCAGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18773 False 1246 lncRNA 0.49 6 6583054 6615589
TU18776 False 745 TUCP 0.33 5 6584480 6615589
TU18774 True 319 lncRNA 0.30 2 6606074 6615589

Neighbor

gene id symbol gene type direction distance location
CI01000001_06507334_06512409 ZNF362B, ZNF362 coding downstream 70645 6506173 ~ 6512409 (-)
CI01000001_06307614_06307988 TAF13, TAF13.S coding downstream 274701 6307404 ~ 6308353 (-)
CI01000001_06285353_06286524 NA coding downstream 296530 6283778 ~ 6286524 (-)
CI01000001_06275328_06282035 NA coding downstream 301019 6273801 ~ 6282035 (-)
CI01000001_06209325_06237504 LAMB2L coding downstream 345550 6209311 ~ 6237504 (-)
CI01000001_06756063_06798700 MEGF6A coding upstream 140449 6756038 ~ 6799081 (-)
CI01000001_06804031_06824280 NA coding upstream 187287 6802876 ~ 6824280 (-)
CI01000001_06932075_06937182 NA coding upstream 316032 6931621 ~ 6937231 (-)
CI01000001_06945753_06946316 NA coding upstream 330164 6945753 ~ 6946365 (-)
CI01000001_06965170_06976281 RNF207B, RNF207 coding upstream 349482 6965071 ~ 6976281 (-)
G16740 NA non-coding downstream 34097 6548744 ~ 6548957 (-)
G16730 NA non-coding downstream 46102 6536722 ~ 6536952 (-)
G16711 NA non-coding downstream 110127 6472514 ~ 6472927 (-)
G16710 NA non-coding downstream 111444 6471319 ~ 6471610 (-)
G16687 NA non-coding downstream 126672 6455569 ~ 6456382 (-)
G16793 NA non-coding upstream 19837 6635426 ~ 6635651 (-)
G16794 NA non-coding upstream 21026 6636615 ~ 6641776 (-)
G16830 NA non-coding upstream 56680 6672269 ~ 6673307 (-)
G17786 NA non-coding upstream 214737 6830326 ~ 6830776 (-)
G17789 NA non-coding upstream 271329 6837525 ~ 6890414 (-)
G16664 NA other downstream 235099 6344104 ~ 6347955 (-)
G16462 NA other downstream 1353469 5222777 ~ 5229585 (-)
G16332 NA other downstream 1625212 4950689 ~ 4957842 (-)
G15736 NA other downstream 1781659 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 1854847 4725927 ~ 4728210 (-)
G17911 NA other upstream 635722 7251311 ~ 7267952 (-)
G18023 NA other upstream 1140912 7756501 ~ 7757520 (-)
G18223 NA other upstream 1310515 7926104 ~ 7928517 (-)

Expression


Co-expression Network