G20286


Basic Information

Item Value
gene id G20286
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10875115 ~ 11303893 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU22794
GTTACTTCCGCTCGTGCCCTTCTGGTCTTAGCGACGCTTGCATTTGGTGCAAGAAGAAACTTAAATATGAAAACTTGGCTAGACATAATAGATTTTTTTTTTAATTAAAGAGAAGATGGTGGTCTATCAGAGACGAAAGAAAACATCCTTGTTATATTATTGTGTAACGTTACCTCTGTGTGGAAATTCAACGAGATACGCAATCTTTGACTTTCAATCTTTCTCCTGTTGATTATGCGGTTCCGGCTCAGCGGTGATCCACAGGGATCTCTTTCTCCATACAAAACACTCAAGTATGTAATATCTCCTGATTTTGTTCTGACAGCTGGGGGACTAAATGGCTCAAAAACTGCCTTCTCTTTCTGCGTGGAACAACACTCGACCTTCATGAAGATCTAATGTTTGCTATTGTCAACTGAAGTATCAGTCCTCATCAGAGATAAATAAACATGGGAATATGATATGGACTCAGTGTATGCTTAAGTAGCTTTATTTGGTAACATTATTATC

Function

NR:

description
PREDICTED: rho GTPase-activating protein 23-like isoform X8

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU22794 True 510 lncRNA 0.36 2 10875115 11303893

Neighbor

gene id symbol gene type direction distance location
CI01000001_10862471_10864514 NA coding downstream 9345 10862225 ~ 10865770 (-)
CI01000001_10822800_10843434 NA coding downstream 31681 10822680 ~ 10843434 (-)
CI01000001_10798413_10798703 NA coding downstream 76182 10798329 ~ 10798933 (-)
CI01000001_10783090_10786991 NA coding downstream 88124 10782850 ~ 10786991 (-)
CI01000001_10676846_10683262 ANKRD33AA coding downstream 191071 10676522 ~ 10684044 (-)
CI01000001_11385404_11386042 NA coding upstream 79689 11383448 ~ 11388934 (-)
CI01000001_11397805_11428592 CASZ1 coding upstream 93503 11397396 ~ 11428663 (-)
CI01000001_11446246_11449035 NA coding upstream 141993 11445886 ~ 11449066 (-)
CI01000001_11472071_11477723 NA coding upstream 168077 11471970 ~ 11477774 (-)
CI01000001_11649219_11650300 NA coding upstream 345169 11649062 ~ 11650300 (-)
G20268 NA non-coding downstream 851 10873956 ~ 10874264 (-)
G20237 NA non-coding downstream 40947 10822047 ~ 10834168 (-)
G20180 NA non-coding downstream 94097 10779120 ~ 10781018 (-)
G20183 NA non-coding downstream 98647 10773208 ~ 10776468 (-)
G20494 NA non-coding upstream 359682 11663575 ~ 11663824 (-)
G20496 NA non-coding upstream 377367 11681260 ~ 11681753 (-)
G20501 NA non-coding upstream 529715 11833608 ~ 11833881 (-)
G20588 NA non-coding upstream 584619 11888512 ~ 11889125 (-)
G20136 NA other downstream 335265 10539027 ~ 10539850 (-)
CI01000001_09804494_09811219 NA other downstream 1054219 9804429 ~ 9811219 (-)
G18223 NA other downstream 2946598 7926104 ~ 7928517 (-)
G18023 NA other downstream 3117595 7756501 ~ 7757520 (-)
CI01000001_12878462_12899012 NA other upstream 1569505 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 1616706 12920599 ~ 12925496 (-)
G20555 NA other upstream 2038096 13341989 ~ 13348146 (-)

Expression


Co-expression Network