LOC122331057 (lamb1a,lamb1,LOC107662456,LOC107595246,LOC107703183)


Basic Information

Item Value
gene id LOC122331057
gene name lamb1a,lamb1,LOC107662456,LOC107595246,LOC107703183
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056723.1
NCBI id CM032092.1
chromosome length 17260642
location 16536933 ~ 16565638 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU251938
CTGAGCTGTGTGGATGGGGAAGGAAAGAGGAAGTGTGGAGGAGAGGGATGTGACGGCCTCACCACACTCGCTCACAACGCCTGGCAGAAAGCCAAGGACTTTGACCTGGAGATCATCAGCGCTATGGAGGAAGTGGACAagctctccaaaatgGTGTCAGAGGCAAAGGTAAAAGCAGATGAAGCAAAGTTTAATGCTCAAGAAGTGCTGGCAAAAACCAACGAGACCAAAAAGCGTGTGGATGGAAGCAATGAGGAGCTACGGCAACTCATCAGACAGATTCGAGACTTTCTCACTCAAGATGGGGCGGACCTGGAAAGCATCGAGGCTGTGGCCAATGAGGTTCTGCAAATGCAGATGCCCACCACTCCAGCCCAGCTGCAGAACCTGACCGCAGAGATCAGGGACCGCGTGAGCAGCTTGACAGACGTCGAGGACATCCTCAACCAGAGCGCTGCTGACATTCTGAGAGCAGAAAGCCTGCTGGAACAAGCCCGCAAGGCCAGAAAGGAGGCGATGGATGTGAAAGACACTGCTGAGATGGTGAAGGAGGCCTTGCAGCAGGCTGA
>XM_043228498.1
CGCAGCTCCAGCTGCAGTAAAGCAGCGGTACGGTCTGCGGGGATCAGACTCAGCGCGTCAGTTTCCAAGCAAAATCTGGACTACTGCCCCCCCGGCTGAAGAAAAGATCTAGAAACATGCTGTTACAGCTCGCAGCCCTTTTAATTTTAGGGGCATTGGCTCTCGCAGATGTGCCTGAGCTGGGAGATGTTTGCACAGAGGGGAGCTGTTATCCTGCCACGGGAGATCTTCTCATTGGGAGAGCACACCAGCTCTCAGCCACTTCCACATGTGGACTCCACAAGCCCGAGCCCTTTTGTATCGTCAGTCATTTGCAGGAAGAGAAGAAGTGCTTTGTGTGCGACTCCAGGGGAACCTACGATGAAAGCACGCACCAAGTAACCAGCCACAGAATCGAAAATGTCGTGACTACGTTAGCCCCAAACCGCCTCAAGACTTGGTGGCAGTCAGAAAATGgcCTGGAGAACGTCACAATCCAGCTGAACCTGGAGGCAGAGTTCCACTTCACCCACCTCATCATGACCTTTAAAACGTTCAGACCTGCTGCTATGGTGATCGAACGGTCGTCAGACTTTGGGAAGACTTGGCAGGTGTACCGTTACTTCGCCTATGACTGCGAGTCCTCCTTCCCCTTCGTCTCTCAAGGACCCATGACCAAAGTGGACGATGTTATCTGCGATTCCCGCTACTCCGACATCGAACCCTCAACTGAGGGCGAGGCCATCTTTAGGGTTTTGGATCCAGCTTTCAGGATTCATGATCCCTACAGCCCCAGAATTCAAAACATGCTAAAGATCACTAATCTCAGGGTGAAGTTCACTAAGCTGCATACTCTCGGGGACAATCTTCTGGACTCGCGTATAGAGATCAAGGAGAAGTACTACTATGCGATTTACGACATGGTGGTGAGAGGAAACTGTTTTTGCTATGGTCACGCATCTGAATGTGCCCCCATCGATGGAGCTGGAGAGGTCGTGGATGGCATGGTCCATGGCCATTGTATGTGTAATCATAACACCATGGGGCTGAACTGTGAGCGCTGCCAGGACTTTTACCACGACCTGCCCTGGAGACCCGCGGAAGGACGCAACACCAACGCCTGTAAAAAGTGTAACTGCAATCATCACTCAGACTCCTGTCATTTTGACATGGCCGTGTATCGGGCCTCGGGTAACGTGAGCGGCGGCGTGTGCGACGACTGCAGACACAACACCATGGGTCACAAGTGTGAGCAGTGCAAGCCCTTCTTCTACCAGCATCCGGAGAAAGACATCCGTGACCCCAACATCTGCGAGTCCTGTAACTGTGATCCGGTCGGCTCTCTCAACGGTGGAGTGTGTGATCCTCTGACAGACGTGTCTCTCGGGCTGATCGCGGGTCAGTGTCGCTGTAAGCCTAATGTGGAGGGCGAGCGCTGTGACCAGTGCAAACAGGGCCATTACGGACTCAGCGACGACCCTCTGGGATGCCAGCCGTGCACATGCAATGCTTTGGGGACGGTTCCAGGTGGAAGTCCCTGCGATACAGACTCAGGAAACTGTTACTGTAAACGTCTGGTTACCGGAAGGAACTGTGACCAGTGTCTGCCTCAGCACTGGGGTCTCAGTAACGACATGGATGGCTGCAGACCATGTGACTGTGATCATGGTGGTGCAATCAATAACCACTGCTCTCCTGAATCGGGTCAGTGTCAGTGTCGCGAGCACATGTTTGGCAGACGCTGTGACCAGGTGGAGTCTGGTTTTTACTTCATCGCTCTGGACCACTACACTTATGAAGCCGAGGACGCCAAGTTTGGACCTGGTGTGACTGTCGTCCCAAGACCCCAGCCTCAGGACAGATCTCCTACGTGGACTGGCATTGGTTTTGTGAACGTTCCTGAAGGCGCCTTTCTCGAGTTCAACATCGACAACATCCCCTACTCTATGGAGTACGACATTATCATCCGATATGAGCCTCAGCTGCCGGAGCAGTGGGAGGAGGTGTTGATGACTGTCATCAGGCCTCGAGTCATTACCGCCGACAGCCGCTGTGCCAACACAATGCCTGACGATGACAACCAGGTGGTGTCTCTGCATCCTGGATCCAGGTATGTGGTGCTGTCTAGGCCTGTGTGTTTCGAAGAGGGCTTCAACTACACCGTGCGCTTGAGTCTGTCTCGCTACTCGGCTCTCAGCGATGTGCAGTCGCCGTACACGCTCATCGACTCGATCGTCCTCATGCCACACTGCAAAAACCTGGATCTTTTCTCTGGCTCTGGGTCAGAGGGTGGAGACATGGTGACCAACAGCGCCTGGGAAACGTTCCAGCGCTACCGCTGTTTGGAGAACAGCCAAGCAGTGGTGAAAACCCCCATGACTGATATCTGCAGGAATTACATCTTCAGTGTGTCGGCTTTTCTCCACCAGGGAGTTAAAGCCTGTCAGTGTGACCCGCAGGGCTCTCTCAGCACGGTGTGCGACCCGAGCGGCGGCCAGTGCCAGTGCCGTCTCAACGTTGTTGGCAGGAACTGCGATAAATGCGCCCCGGCGACCTTCCTCTTTGGGCCGCAAGGCTGCAGACCATGTGACTGCAGTCCTGAGGGGTCCGTCCACTCCTTCTGCCACGAGGCCACCGGTCAGTGCGAGTGTATTCCCGGGGCGTACGGGCGGCAGTGTGACCGCTGTCTGCCGGGACACTGGGGATTCCCAAACTGTCGCCCCTGCACCTGTAATGGCCACGCGGAGCAGTGTGACCCGCTCACGGGACAGTGTCTGTCCTGCCGGGACCACACCACTGGACACAACTGCGAGAGGTGTTTGAATGGCTATTACGGTGACCCCGTCCTGGGCTCTGGAGACCACTGCCGCCCCTGCATGTGTCCGGACGGTCCGGGCAGCGGCAGACAGTTCTCCGGCACGTGTTATAAAAGCCTCGACTCCAACCAGGTGTTCTGCGTCTGCAACCAGGGATATAAAGGTGCCAGGTGTGAAGAATGCGCCCCTGGTTATTACGGAAACCCACACGAGGTGGGCGGAGAATGCCGGCCCTGTCAGTGCAACAACAACATCGACATGACGGACCCGGAGTCCTGCGATGCTCGAACGGGCGCTTGTCTCAAATGCCTTTACCACAGCGAGGGTGAAAGCTGTGACCGCTGCAAGATCGGCTATTACGGCAACGCACTGACCCAGAGCTGCAGGAagtgtgtgtgtaatcacaTGGGCACGGTTGAGGAGGCGTGCACCTCTCCGGGTAACTGCAGCTGTGAGCTGAGCAGCGGTCAGTGTCAGTGTCTTCCTCAAGTTGTGGGTCAGCGTTGCGATCAGTGCGCTCCGGACACCTGGAACATGGCCAGCGGGAACGGCTGCGAGGCCTGCGACTGCGACCTCAAACACTCCTTCGGCTCGTCCTGCAACGAGATCATGGGCCAGTGCTCTTGTAAACCCGGGTTTGGAGGCAGAACCTGTCGAGAGTGTCGAGAGCTGTTCTGGGGAAACCCTGAGGTCAAATGTCACGCATGTGATTGTGACCCAAGAGGCATCGCGGAGCAGCAGTGCAACAAGGTCACAGGTCACTGCGTTTGCGTGGAAAGTGTTTCCGGGCCTCGATGTGACACGTGTGCTCGAGGCTACACCGGTGAGTTCCCACACTGCGAGCGCTGCCACCAGTGCTTCGCTGAATGGGATGTGATTGTGGGCGACCTCACCAACCAGACCCACAGACTGGTCCAGAAGGTCAATACCATCAAAGCCACTGGCATTACCGGACCCTACCAAGCTACCATCAATAACGTTGAAAGCAGTGCCAACTCAATCCGCAACATCCTGGCCCAAAATCCAGCCACTCAGCCCCTAACGGAGATCCAAGGACTTCTCGAACAAGCTACTGCCTTGATGTCTGAAATGAACACCAACCTTAACCTGACGGAGGAGACCTTGTCCGAGATATCATCCGACAGCAACAGCACAGGCACCAAACTGAAGTCCCTCAAAGAAGAAGCTCAGAAACTGGAACAGACGGTGAAGGACCTTCAGGAGCAGGTGGAGTTTGTGAAGAACTCAGACATTCGAGGGGCCAGAGCCAGTGTGACTCGATACTATGAGCAGTCCCAGATGGCGGAGATCCGTGCAAATGCCTCCATCATTGATCCAGACAACCTGGTCAATCAGTCTGCCACCCTGAGGACAGAAACAGAAGACTTAATGAACCAGACCAAAGAAGAGTTCATCCAACGACACGATGAGTTTGAGAAGAAACTGGACAACCTTGCTGGACAGCTGGAGACTCTGGACCTGTCTGAGCTTAGCAAGAAGACATGTGGCAGTCCAGCTGGCTCAGAGAACTGTGCCGACTCTCCTGCGGGAGGCCTGAGCTGTGTGGATGGGGAAGGAAAGAGGAAGTGTGGAGGAGAGGGATGTGACGGCCTCACCACACTCGCTCACAACGCCTGGCAGAAAGCCAAGGACTTTGACCTGGAGATCATCAGCGCTATGGAGGAAGTGGACAagctctccaaaatgGTGTCAGAGGCAAAGGTAAAAGCAGATGAAGCAAAGTTTAATGCTCAAGAAGTGCTGGCAAAAACCAACGAGACCAAAAAGCGTGTGGATGGAAGCAATGAGGAGCTACGGCAACTCATCAGACAGATTCGAGACTTTCTCACTCAAGATGGGGCGGACCTGGAAAGCATCGAGGCTGTGGCCAATGAGGTTCTGCAAATGCAGATGCCCACCACTCCAGCCCAGCTGCAGAACCTGACCGCAGAGATCAGGGACCGCGTGAGCAGCTTGACAGACGTCGAGGACATCCTCAACCAGAGCGCTGCTGACATTCTGAGAGCAGAAAGCCTGCTGGAACAAGCCCGCAAGGCCAGAAAGGAGGCGATGGATGTGAAAGACACTGCTGAGATGGTGAAGGAGGCCTTGCAGCAGGCTGAGCGCGCCAGAGCAGTGACCGAGGCTCTGAAACAGGCCAGCGCTGACATCAAGGGAACGCAAGACCTGCTGATCTCCgtgGAGTCGGAGACGTCGGACTCGGAGCTAAAACTGAGTAACGCCACCCGAAGGCTGCTGAAGTTGGAAAGCGATGTAgctttgctgaaagaaaaggcactcaacacctccaccagcgccaacagcacagagaaagaggCGGACAGCATCAAGGCACTTGCTGAGCAGCTCAAAAAGGATCTGGATTCAGAGTTGAAGGACAAGTACAGTAGTGTTGAGGAGCTAatcacacagaaagcagaaagGAGTGCAGAGGCcaagaaaagagcagaaaaactCCAACAGGAAGCCAAAACTCTGCTGCTACAGGCCAGTGACAAACTCCAGCTGCTAAAAAatctTGAGAAAAACTATGATGAAAATCAGAAGCTGCTGGAGGACAAGGCCAATGAACTGGTGGATCTGGAGAAGGCTGTGAAAGAACTGCTTCAGGAgatcagtcacaaagtcaccGTCTACAGCACCTGTCTGTTTTAACACTACTACTGACTGCTTTAGGAACATATATTACATCAAAT

Function

symbol description
lamb1a Predicted to enable integrin binding activity. Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including animal organ development; detection of light stimulus involved in visual perception; and fin regeneration. Predicted to be located in membrane. Predicted to be part of laminin complex. Is expressed in several structures, including digestive system; fin; nervous system; optic cup; and pectoral fin bud. Used to study coloboma. Human ortholog(s) of this gene implicated in autistic disorder and lissencephaly 5. Orthologous to human LAMB1 (laminin subunit beta 1).
lamb1 An extracellular matrix structural constituent. Involved in several processes, including endodermal cell differentiation; neurogenesis; and substrate adhesion-dependent cell spreading. Located in basement membrane and extracellular space. Part of laminin complex. Implicated in autistic disorder and lissencephaly 5.

NR:

description
PREDICTED: laminin subunit beta-1-like

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG:

id description
K05636 LAMB1; laminin, beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU251938 False 569 TUCP 0.54 4 16537836 16539711
XM_043228498.1 True 5512 mRNA 0.54 35 16536933 16565638

Neighbor

gene id symbol gene type direction distance location
LOC122331314 LOC107600734,LOC107716905,LOC107683095 coding downstream 46249 16483237 ~ 16490684 (-)
LOC122331312 LOC107683095 coding downstream 53287 16473389 ~ 16483646 (-)
LOC122331045 lamb1,lamb1a,LOC107595246,LOC107739090,LOC107662456,LOC107703183 coding downstream 63028 16470780 ~ 16473905 (-)
LOC122330713 islr2,LOC107751265,LOC107589315,LOC107749605,LOC107595243 coding downstream 73454 16459717 ~ 16463479 (-)
ccdc33 LOC107703187,LOC107751273,LOC107578173,LOC107662475 coding downstream 296262 16229300 ~ 16240671 (-)
lamb4 lamb4,LOC107712510,LOC107589316,LOC107703192 coding upstream 547 16566185 ~ 16583454 (-)
acot19 zgc:101553,LOC107703184 coding upstream 22808 16588446 ~ 16596550 (-)
ubl7a ubl7a,ubl7,LOC107703185,LOC107662472,LOC108436908,LOC107595265 coding upstream 31050 16596688 ~ 16602696 (-)
LOC122330377 LOC107662483,LOC107739067,LOC107595271,LOC107712506,LOC107589317,LOC107703193,LOC101884359 coding upstream 42103 16607741 ~ 16618322 (-)
scamp5a scamp5,scamp5a,LOC108436905,LOC107589318,LOC107703195,LOC107662455,LOC103363822,LOC107395508 coding upstream 55333 16620971 ~ 16628483 (-)
LOC122331058 NA non-coding downstream 11188 16525038 ~ 16525745 (-)
G169967 NA non-coding downstream 178259 16347472 ~ 16358674 (-)
G169908 NA non-coding downstream 470953 16061441 ~ 16065980 (-)
G169910 LOC107675266,LOC107751276,LOC107589308 non-coding downstream 472509 16063999 ~ 16064424 (-)
G169852 NA non-coding downstream 733321 15802951 ~ 15803612 (-)
G170179 tmem266,LOC107557978,LOC107739101 non-coding upstream 547831 17113469 ~ 17119681 (-)
G170176 NA non-coding upstream 554144 17119782 ~ 17125993 (-)
G170210 NA non-coding upstream 597167 17162805 ~ 17163323 (-)
G170214 NA non-coding upstream 618376 17184014 ~ 17189055 (-)
G170090 lamb1,lamb1a,LOC107703183,LOC107595246,LOC107662456,LOC107589344 other downstream 35343 16500177 ~ 16501590 (-)
G169989 LOC107600734,LOC107683095,LOC107716905 other downstream 62268 16473722 ~ 16474665 (-)
LOC122330715 LOC107572180,LOC107661100,LOC103373902,LOC101175368 other downstream 79585 16455031 ~ 16457348 (-)
syt8 LOC107595270,LOC107742052,LOC107549275,LOC107758745,LOC107675261,LOC108428822,LOC103035847 other downstream 785353 15742529 ~ 15751580 (-)
ush1c ush1c,LOC107675293,LOC107549256,LOC107742065,LOC107675444 other downstream 934085 15584551 ~ 15602848 (-)
G170123 LOC107712515,LOC107589322 other upstream 210196 16775834 ~ 16777239 (-)
G170177 etfa,LOC107712526,LOC107557988,LOC107688945,LOC107589358,LOC107739100 other upstream 560430 17126068 ~ 17132042 (-)
G170225 NA other upstream 659804 17225442 ~ 17226023 (-)

Expression


Co-expression Network