LOC122331302 (ush1c,LOC107549256,LOC107675293,LOC107675444)


Basic Information

Item Value
gene id LOC122331302
gene name ush1c,LOC107549256,LOC107675293,LOC107675444
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056723.1
NCBI id CM032092.1
chromosome length 17260642
location 15264386 ~ 15278628 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228867.1
ATGGGACCCACAGGTGGCGAGGAATTTCGGCATAAGGTGGAGCTGCTGATTGATAATGAAGCAGAGAAGGACTATCTGTACGATGTTCTCCGCATGTACCACCAATCCATGGACATTCCTGTCCTGGTCGGCGACCTGAAGCTGGTGATAAATGAGCCCAAACGCCTTCCTCTGTTCGATGCCATCAGACCCCTGATTCCTCTGAAGCACCAGGTGCAGTACGACCAGCTCACTCCAAAGAGATCCAGGAAGTTGAAGGAAGTCCGTCTGGATCGCACACATCCTGAGGGTCTGGGTTTGAGCGTTCGAGGTGGGCTGGAGTTCGACTGCGGCCTCTTCATATCACAGATAGTCAAAGATGGACAGGCAGGAAATGTCGGCCTACAGGTTGGTGATGAGATTGTGCGTATCAATGGCTACTCCATCTCCTCCTGCATTCACGAGGAGGTCATCAATCTCATTAAAACCAAGAAGATTGTGTCTCTCAAAGTCCGCCACGTGGGAATGATTCCTGTCAAGAGCTCCTCTGAAGACCCTCTGAAGTGGCAGTTTGTGGATCAGTTTGTGTCTGAATCAGGGGAGAAAAAGACCAGCGTGGCTGGTTTGGCTTCAGTTGGAGGGAAAGAAATCAAGGAAAAGAAAGTTTTTCTTAGTTTGGTGGGAACTAAAGGCATGGGAATCAGCATATCTAGTGGACCGACACAGAAACCAGGCATCTATGTGAGCAATGTGAAGCCAGGTTCAGTCTCATCTGAAGTGGGCTTACAgGTTGGCGACCAGATTGTGGAGGTCAATGGGGTGGATTTCACCAACCTGAGCCATCAAGAAgcaGTGCGGGTGTTAAAGAGCAGCAGGAGTCTAACCATCACTGTCCTCACTGGAGCTCGAGCTTTTATGACGGATGAGGAGCGGCTGGCAGTTGAAGCTCGCCGTGAGCTTGAAAGACAAGAGCTAATGCATCAGAAGAGGGTGGCATTAGAGACCAATAAAATCGTCAAAGAACAACAGGAGAAAGAACGCCAGAGGAAGATGGAGATATCACAGAAGACTGCGGAGGAAGAAGAACGCTATCGCAGAGAGATGGAGAGAATCGAAGCGGCGGAAAAAAAGCACCACAAAGAGTGGGAAGAAGATTGGGCTTCCAAAGAGAAATCCAAATCACGTCCCCCTCCCTTCCCCCCACCTCCACCACCTGCACGTAATGCACCTTCACCCAAACCCAAAACCTCCACGTTCGGTTGGTTCTACCGTTATGAAGGAAAGTTGCCTACACTCAAAAAGAAAGGAAAAGAGactaaaaagaagaagaagatgtcCAAGACTGACACTCTCCCAGCTgagaaaaagaacaagaaaGAGATGGAGTTTGAGCTGAAACTTGCAAAGGAGAAGGAAGAGATACTTGAGCGGGAGAAGCAGATGAAAATCAGCAGACTTCTACAAGAGGTGTCAGAAACTGAGAGGGAAGATCTGGAAGAGTCTGAGAAAGTGCAGCATTGGGTGGAGAGGCTCTGTCAAACCAGATTAGAGCAAATCTCCTCTGTTGAAAACGATTCCCCAGAGATGTCTCCAACCCGTTCCCCTACGTCAACTGGTCCCACCAATCGGAGGTTTCCTGGAGGCTTGACCTTGGCCACTACTGACCTTGATGACATCAACTTAGATGATGTAGACCAGAGTCTTAGGCAACCTTTGAAAAGACTCGCCCCAACCCCACCTACATCAAACCAACCTCCTCCTCCCTTACCTCTCCCTCCACCCTCACCACGTCTTTACCACACATCCAGCCATCGCCCTCCATCTCCAAGAGCACAGCTCCCAATGCAACCCAGTCCCAGACCAGGCCCTCAACGCCCACCTTCTCCACCGGCCACAAGGGTACCCCCCTCCACAATAGGTCGTAGCCGACAACCTCCTGCTCCCGCTATTCTCTTCCAGGGGTCTGTCCTCATCTCAGCCACCTCCCCGCCACCACCTCCTCCCCCTCCACCACCACCGCctcccctccaccacctccacccCTGCACATGGAGGACAAGTACCACGTCACGGTCACCCAGCTATCCCGCTCCTCAAGCTTATCCGAACAGGGAAGCAGGTTTGGGGACAATGGTTACCGCCAGAGAGGAGGCTTCCACTCCGCCATTCCCAGTGATCTTTCACGCCCGCCCAGCCCAAAACTGA

Function

symbol description
ush1c Predicted to enable actin filament binding activity. Acts upstream of or within neuron development; startle response; and synapse organization. Predicted to be part of stereocilia ankle link complex. Predicted to be active in plasma membrane and stereocilium tip. Predicted to colocalize with photoreceptor connecting cilium and photoreceptor inner segment. Is expressed in brain; hair cell; pleuroperitoneal region; sensory system; and trunk musculature. Used to study Usher syndrome. Human ortholog(s) of this gene implicated in Usher syndrome; Usher syndrome type 1; Usher syndrome type 1C; and autosomal recessive nonsyndromic deafness 18A. Orthologous to human USH1C (USH1 protein network component harmonin).

NR:

description
PREDICTED: harmonin-like

GO:

id name namespace
GO:0046549 retinal cone cell development biological_process
GO:0060122 inner ear receptor cell stereocilium organization biological_process
GO:0050808 synapse organization biological_process
GO:0001964 startle response biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228867.1 True 2184 mRNA 0.52 22 15264386 15278628

Neighbor

gene id symbol gene type direction distance location
LOC122330446 NA coding downstream 24813 15238557 ~ 15239573 (-)
LOC122330435 LOC107553844 coding downstream 172688 15053638 ~ 15091698 (-)
ptprjb.2 LOC107744187,LOC107688568 coding downstream 241393 14953455 ~ 15022993 (-)
LOC122330579 osbpl5,LOC107675277,LOC107549292,LOC107717812,LOC107740565,LOC107688553,LOC108439258 coding downstream 246884 14984506 ~ 15017502 (-)
LOC122331299 ptprd,LOC107564123 coding downstream 311490 14949790 ~ 14952896 (-)
LOC122330448 tnnt3a,LOC107675259,LOC107758743,LOC107549286,LOC107675470 coding upstream 68708 15347336 ~ 15351300 (-)
LOC122330444 LOC107758754,LOC107549254,LOC107675454 coding upstream 75514 15354142 ~ 15382723 (-)
kcnj11 kcnj11,LOC107758740,LOC107675278,LOC107549287,LOC107576152,LOC107744183,LOC107675448 coding upstream 219689 15498317 ~ 15501750 (-)
LOC122330390 NA coding upstream 281240 15559868 ~ 15562681 (-)
LOC122330908 LOC107675294,LOC107549256,LOC107675444 coding upstream 310893 15589521 ~ 15590792 (-)
G169783 NA non-coding downstream 341103 14918178 ~ 14923283 (-)
G169781 NA non-coding downstream 358917 14905237 ~ 14905469 (-)
G169650 NA non-coding downstream 400345 14860685 ~ 14864041 (-)
G169649 NA non-coding downstream 404604 14859304 ~ 14859782 (-)
G169640 NA non-coding downstream 475348 14788814 ~ 14789038 (-)
G169812 LOC107744184,LOC107758749,LOC107675459 non-coding upstream 211275 15489903 ~ 15494079 (-)
G169811 LOC107758749,LOC107744184 non-coding upstream 215646 15494274 ~ 15548812 (-)
G169837 NA non-coding upstream 385457 15664085 ~ 15664891 (-)
G169852 NA non-coding upstream 524323 15802951 ~ 15803612 (-)
G169908 NA non-coding upstream 782813 16061441 ~ 16065980 (-)
LOC122330438 LOC107758747,LOC107744187,LOC107549291 other downstream 211462 15029101 ~ 15052924 (-)
G169631 NA other downstream 509559 14754174 ~ 14754827 (-)
G169622 NA other downstream 575797 14687446 ~ 14688589 (-)
LOC122331294 NA other downstream 1176461 14083708 ~ 14087925 (-)
LOC122330425 NA other downstream 1271537 13992252 ~ 13992849 (-)
LOC122331105 abcc8,LOC107675473 other upstream 223993 15502621 ~ 15550803 (-)
ush1c ush1c,LOC107675293,LOC107549256,LOC107742065,LOC107675444 other upstream 305923 15584551 ~ 15602848 (-)
syt8 LOC107595270,LOC107742052,LOC107549275,LOC107758745,LOC107675261,LOC108428822,LOC103035847 other upstream 463901 15742529 ~ 15751580 (-)
LOC122330715 LOC107572180,LOC107661100,LOC103373902,LOC101175368 other upstream 1176403 16455031 ~ 16457348 (-)
G169989 LOC107600734,LOC107683095,LOC107716905 other upstream 1195094 16473722 ~ 16474665 (-)

Expression


Co-expression Network