LOC122330425


Basic Information

Item Value
gene id LOC122330425
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056723.1
NCBI id CM032092.1
chromosome length 17260642
location 13992252 ~ 13992849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU250945
CCCACTTCTTTACATCATCAGAcatgcttcagtgctctgagagtgtttatagtgctgtgagtttaacacttcatgactgagagcagaacacaacacaatcttcatcatcacacaagactcaactactacaatgaacaacatcctcatcctcatctggactcTCACGCTGTTTGCTCAAGagTGTAGAGGACAGATCACTGTAACTCAGAGTCCatcattaataacaacaactcgAGGACAAGACGTCACAATAAACTGTAAAACCAGCAGCAGAGTGTATGGTGGTGACTACTTACACTGGTACttacagaaacctggagaagctcctaaactcctgaTATATAGAGTTAACAGCCtccagtcaggaactccatctagattcagtggaagtggatctgacagtgatttctctctgaccatcagaggagtccagactgaagatacaggagattattactgtcagagttttCACTACCCAAACAGTAAatatgtgttcac
>unassigned_transcript_2658
cacaacacaatcttcatcatcacacaagactcaactactacaatgaacaacatcctcatcctcatctggactcTCACGCTGTTTGCTCAAGagTGTAGAGGACAGATCACTGTAACTCAGAGTCCatcattaataacaacaactcgAGGACAAGACGTCACAATAAACTGTAAAACCAGCAGCAGAGTGTATGGTGGTGACTACTTACACTGGTACttacagaaacctggagaagctcctaaactcctgaTATATAGAGTTAACAGCCtccagtcaggaactccatctagattcagtggaagtggatctgacagtgatttctctctgaccatcagaggagtccagactgaagatacaggagattattactgtcagagttttCACTACCCAAACAGTAAatatgtgttcacacagtga

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250945 True 498 TUCP 0.42 2 13992259 13992849
unassigned_transcript_2658 False 417 V_gene_segment 0.42 2 13992252 13992761

Neighbor

gene id symbol gene type direction distance location
rfwd3 rfwd3,LOC107677830,LOC107688729,LOC107723989,LOC107572234,LOC107754982,LOC107574413 coding downstream 300548 13683352 ~ 13691704 (-)
glg1a glg1a,LOC107559147,LOC107688714,LOC107677828,LOC108428438 coding downstream 309453 13662920 ~ 13682799 (-)
si:dkey-234i14.2 LOC107754985,LOC107677826,LOC107572228,LOC107559149 coding downstream 335766 13642308 ~ 13656486 (-)
urahb LOC107688889,LOC107723959,LOC107559139 coding downstream 350310 13640592 ~ 13641942 (-)
tdrd12 LOC107677829,LOC107559140,LOC107570649,LOC107688857,LOC107688849,LOC107754978 coding downstream 352918 13625224 ~ 13639334 (-)
irf7 LOC107675276,LOC107562829 coding upstream 190227 14183076 ~ 14188343 (-)
hic1l LOC107707545,LOC107675304,LOC107562834,LOC107558318,LOC107709953,LOC107675382 coding upstream 242934 14235783 ~ 14243209 (-)
LOC122330315 LOC107675385,LOC107558317,LOC107707546,LOC107675305,LOC107562826,LOC107709937 coding upstream 250597 14243446 ~ 14256791 (-)
LOC122330318 NA coding upstream 264268 14257117 ~ 14261412 (-)
LOC122330316 mlkl coding upstream 268655 14261504 ~ 14266148 (-)
G169490 LOC107687028 non-coding downstream 17634 13806085 ~ 13974618 (-)
G169493 LOC107687028 non-coding downstream 38961 13802856 ~ 13953291 (-)
LOC122330424 NA non-coding downstream 121533 13870205 ~ 13870719 (-)
LOC122330415 igl4v8 non-coding downstream 132633 13781946 ~ 13859619 (-)
LOC122330432 NA non-coding downstream 181165 13810577 ~ 13811087 (-)
G169510 NA non-coding upstream 18036 14010885 ~ 14021484 (-)
G169506 LOC107675371,LOC107573038,LOC107574376 non-coding upstream 32551 14025400 ~ 14042328 (-)
G169507 LOC107659785,LOC107573038,LOC107571418 non-coding upstream 45877 14038726 ~ 14109084 (-)
G169516 NA non-coding upstream 65161 14058010 ~ 14135254 (-)
G169505 LOC107675371,LOC107573040,LOC107573038 non-coding upstream 113802 14106651 ~ 14118319 (-)
LOC122331290 NA other downstream 2339 13989336 ~ 13989913 (-)
G169503 si:dkey-234i14.9 other downstream 20248 13971429 ~ 13972004 (-)
LOC122330416 NA other downstream 59578 13932125 ~ 13932674 (-)
LOC122330422 NA other downstream 92412 13832814 ~ 13899840 (-)
LOC122331294 NA other upstream 90859 14083708 ~ 14087925 (-)
G169622 NA other upstream 694597 14687446 ~ 14688589 (-)
G169631 NA other upstream 761325 14754174 ~ 14754827 (-)
LOC122330438 LOC107758747,LOC107744187,LOC107549291 other upstream 1036252 15029101 ~ 15052924 (-)
G169808 NA other upstream 1256106 15248955 ~ 15583635 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC117599576 LOC108279645 non-coding NC_047612.1 CM018558.1 4544541 ~ 4545154 (-)