LOC122331715 (LOC107553789,LOC101886404,LOC107574780)


Basic Information

Item Value
gene id LOC122331715
gene name LOC107553789,LOC101886404,LOC107574780
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 2077735 ~ 2087176 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU252512
CTCATACCGATATAACGTAACTACCTTGAGACTCTTCACAGATGACTCGAGAAGAGCTTCGCTGTAACAACTCAAACAATAAGAAGTAAAGTCAAATGGTGTTCATGTTCAAGAATCAAACGGCgttatgaagatgaagagagtcaagaataggaagaaacacagaagaccagtatcagaagtacataGATGGTGTATTCAAATGACCTACGTTTACCGTGGTGAAGACTCATACAGCATTATGTAGATGAAGGgagtcaagaataggaagaaacacagaagaccagtatcaaaaGTGCTTTATggtgttttcaaataaaaaacatgctcTGATTTTATATTACGTACATTTGGGTTATTCATCCTACCTTGTTCATTT
>XM_043229219.1
TGGTACAGACTTGCTAAACAATATCAAGGCTAAAGTTCTGAAAATGGAAGTATCAGGGAAACTGCTGATATCACGACTGCTTTCTCTGCATAAGAACGGGAAATGGGGGAAAGACGACGTTATAAAGTTGTTTAAAGCCCTTGTCAAGgaatttaatggaaaaaaagacgATTTTCACACATGGATGATGAGAATGCTTTATCGAATGGagattcacaaaataaaagtgtcagATTTGACTTTACAAAACGATGAAAAGATTGTGGATCGTGTTGAGGACAAAATTAACGAAACGGTCAACACTAAAGACAAAACGCTGGACGAGATCATAGAGGAAATTGAAGAACAAGCAGTTATTGATGAACAAACTATGGCAGAGGTGAAGGATATAGTGTCTTCTGTCTCTGATTGTCTTTCAGCTTCTTCAGCACCGCATCTAGGAGGAATAAAGGAGATTCTGTTTAAGCTCTGCAAATCTGCAGAAAAGACAATCGGAAAGAAACCTCGCCTGACTCAGATGGTGAGCTGGTGCATTCTAGTTCTTTCTAAATCGAGTCGACTGGTTCAGGTCGGAACAGGAGAAGGAAAGTCGTGTATCGTTGCAATGTTTGCAGCATATCAGGCATTGATAAAAAACACCCCGGATATCATCTCCAGTTCTCCTGTACTTGCTGAGAGAGATGCTGAAGAATGGTTTGCATTTTATAAGAGACTTGGAATCTCTGTTGGCGTCAACACTAATAAATCAGAAGATAAAGAGCTGAAGAAGTGCTATGAATCTCAAGTTGTTTATGGTACCACTGAAAGTTTTGAGGGTGATTTTCTGAGACAGCGCTTCCACAGAAGAGATGTGAGACCTAACAGAAAGTTTCAGTGCGTTATAGTGGATGAGGTGGACTCGCTAATGCTGGACAAAGGTCTTGAAGTGGTTTACTTGAATAGTAATATGCCAATCATGGAATCTCTCAATGGATTACTGGCTGAAATTTGGTTAATTGTACATCAGCTGAAGCGTTTTGACAATGGAGAGATTTTAGGACCCACTCGGCTCTTCTCTCAGGTGCTGTCTGAAAtcatttgtgaaaatgaaaatattgatcAACTCCGTATTGAGCAGAATTCTACAGATGCAGCAAAAGAACTAGATAATGCAAGTGTCGCCCAAACTCAGGCATTCCTCACCATGTTTGTGGGGAAATGTCCTGAGTATTTCTTTCAACTTTACCAGGAAGGGCCTGATGGGAATTTGGAGAAACTAAAGGAGATCAGTCACAAAGGCACAAGTAAGAAACAAGAAATATCAGTTTTTCTCCTTGGTGATGGAAAATGTCGTTTAGTGTACTCTGAGGAGGACACTCTCGTTAATTCActggaaaaattaattaaaaggtgTTTTCAGTTTGAATCAATGGGGGAACAGACTGATTCTCATATCCCAGGCCTTCAAGATCTCATTAATGGCAAATTACAAACTTGGATTGAAAATGCTCTGCAAGCCACCAAAATGACTCTGGGGCATGAATACGTCCTTCATGGAGATGGAGTCTCTCCTGTTGATTATCAATGCACTGGTGTTGtacaaaacaacatgaaatggGGGGAAGGACTTCAGCAGTTCCTGGAGATGAAACACCAAACTAAACTGTCCAACATGAGTCTAATCACAAACTTCATGTCTAATGTGGGTTTATTTAAGAAATACCCAAACAAGATCTATGGGATCACGGGAACTTTGGGTGAACAAACAGAGCTTGACATGCTGAAGAAACTCTACGATGGCATTGAAACCTGTAAGATTCCCTCCTTTAGACGAAGGAAACTTTATGAGTTGGAGGGCTTGGTGATAGCTGAAGAAAAAGAGTGGGTCAGTACCGTCTGTAATGTTGTTAAACATCAAGTGACCTCCACAGTTTATCGAGGTCCACGAGCAGCTCTTATAATTTGCGAAACGATCAATcgtgcaaaaacattttacaagacTCTTGCTGGCACCATTTCAAAAGATAACCTAAAACTATATGTAAATAACAACATGAATAACtctacaataataaataaaaccatccaAATGGGGGACGTCATCATTGCAACTAATCTAGCAGGTCGAGGTACAGACCTGAAGGTTTGTGAACGTGTAAATGAAGCTGGAGGACTATTTGTGGTGCAAACCTTCTTACCTCTGAACGTCCGTGTTGAACAGCAAGCATTTGGACGAACGGCTCGTCAAGGAAGTCCAGGATCTGCTCAGCTCATCATGTGCACCAGTCATTTCTCTGACGTAGTCAAACTAGTGATGAGCCTCAACACATCTCTTTATAGTTTGCACATCGATCTAAACCGTATTGCAACTATGCTGATGTCACGTCTTGCGAGTATATTGATGCCGAGTGAATGCACAGAGGTTTTATTTGAGGATGCAGTTAATCGCTACCTGAAAAATATCAACTCTCAAACTCACGATGCAATGATCTCCGCTCTCACATGTCTATTAATGAAATCATTTCCAAGTATGGAAAGCCATCTTGAGAAGGCAAAAGCAGCCAGAAATATTCTGGTGAACATCAGACTCTCAAGGTTTCTTGAAAAAGACATTCcgaaaatcacaaatgaggaaGAGCTTTTTTCTGTCTACCTTGATGTTTTGGATGGAATTTACGAAGACGACGTTTTCTCAGATCAGCGTGATGTAATAGTGCCGTCTCTTCATGAGTGCTGGGGTTTGTGGCTCCTGATGCACTCCAGTGAGGAAAAGCCCATTGAGATGAAGAAGGAACAGCTGATGAGGGACTTGTTGAGAGCAAAGCAGACATTTTTGACTAAACAGTCTCCATCCTCCATGGTCTACTATTACATTAGATCTGGAAACAATCTCCGTGAGAAGGGACGCCTTACCGAAAGCATTGAGATGTACACCAAAGCTTTGGAGGATGGTACATCTGGAGAGGTTATTCCTCTCTATAACCGTGCACTGGCCACTATCAAAAGAAAAGACACTGGTTATATCACTCAAGCACTGGCTGATCTGGAGAAGGCTGAAAAGAAAATAGATTTGTACACGTCACATCTGCAGCAGATCctgacttttattaaattatcgAGTCAGGATCCAACAGAAAAAGGTAGCGATTTACTCACCACTCAGTTCCAAGCAAAGTGTGTGATCGTAGACCTACTGAAGATAAACATCCAAGACGCTGTGAAGAAGTTAATGACAGCCGAAAGCAGAGGAAGAAATGTAAGCCtgactgaaaaacacacaatttttCTTGCAGTAGACTTTATTGTCTTTCCGCTGAGACTTATGAAAGAGCTGCCAATggaattaatgcatattaagtCATTGGGTCTTGACACCATTTTTACTTTGGACACCCTATTTTCTTTAAGCGGCTTTTTGTCAAAGATCTTAAAATAGGTTTTGTACGCGCAAAAATcatgaaactgtattttaaaaatccaac

Function

NR:

description
PREDICTED: protein translocase subunit SecA-like

GO: NA

KEGG:

id description
K03070 secA; preprotein translocase subunit SecA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252512 False 379 lncRNA 0.37 3 2077735 2087176
XM_043229219.1 True 3461 mRNA 0.41 2 2077831 2081362

Neighbor

gene id symbol gene type direction distance location
LOC122331724 LOC107571194 coding upstream 364356 1710922 ~ 1713379 (+)
LOC122331716 LOC107662536,LOC107722314,LOC107563124 coding upstream 425153 1647600 ~ 1652582 (+)
LOC122331714 LOC107570577,LOC107749336 coding upstream 432380 1633708 ~ 1645355 (+)
LOC122331726 NA coding upstream 505670 1569927 ~ 1572065 (+)
LOC122331723 NA coding upstream 546062 1529034 ~ 1531673 (+)
LOC122331711 NA coding downstream 7919 2095095 ~ 2104299 (+)
LOC122331712 NA coding downstream 18677 2105853 ~ 2107989 (+)
LOC122331483 LOC107690531 coding downstream 86317 2173493 ~ 2178281 (+)
LOC122331539 NA coding downstream 174149 2261325 ~ 2271136 (+)
LOC122331586 NA coding downstream 233957 2321133 ~ 2329824 (+)
G170504 NA non-coding upstream 124662 1952710 ~ 1953073 (+)
LOC122331742 NA non-coding upstream 456778 1613706 ~ 1620957 (+)
LOC122331737 NA non-coding upstream 726362 1347132 ~ 1351373 (+)
LOC122331736 NA non-coding upstream 750829 1325054 ~ 1326906 (+)
G170422 NA non-coding upstream 846680 1230846 ~ 1231055 (+)
G170639 NA non-coding downstream 96227 2183403 ~ 2183627 (+)
G170657 NA non-coding downstream 133295 2220471 ~ 2220761 (+)
G170662 NA non-coding downstream 144971 2232147 ~ 2232355 (+)
G170663 NA non-coding downstream 148443 2235619 ~ 2235914 (+)
G170673 NA non-coding downstream 168536 2255712 ~ 2256070 (+)
LOC122331469 NA other upstream 48571 2023510 ~ 2029164 (+)
LOC122331718 NA other upstream 369375 1704578 ~ 1708360 (+)
G170438 NA other upstream 567678 1464065 ~ 1510057 (+)
LOC122331738 NA other upstream 592350 1463637 ~ 1485385 (+)
G170431 NA other upstream 725093 1351676 ~ 1352642 (+)
LOC122331475 LOC107558504,LOC107575635,LOC107711457 other downstream 55104 2142280 ~ 2145046 (+)
LOC122331512 NA other downstream 337965 2425141 ~ 3015269 (+)
G170683 NA other downstream 544201 2631377 ~ 2813039 (+)
LOC122331570 NA other downstream 765036 2852212 ~ 2921197 (+)
LOC122331563 NA other downstream 1035126 3122302 ~ 3396823 (+)

Expression


Co-expression Network