RNA id: TU252512


Basic Information

Item Value
RNA id TU252512
length 379
lncRNA type sense_over
GC content 0.37
exon number 3
gene id LOC122331715
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 2077735 ~ 2087176 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCATACCGATATAACGTAACTACCTTGAGACTCTTCACAGATGACTCGAGAAGAGCTTCGCTGTAACAACTCAAACAATAAGAAGTAAAGTCAAATGGTGTTCATGTTCAAGAATCAAACGGCgttatgaagatgaagagagtcaagaataggaagaaacacagaagaccagtatcagaagtacataGATGGTGTATTCAAATGACCTACGTTTACCGTGGTGAAGACTCATACAGCATTATGTAGATGAAGGgagtcaagaataggaagaaacacagaagaccagtatcaaaaGTGCTTTATggtgttttcaaataaaaaacatgctcTGATTTTATATTACGTACATTTGGGTTATTCATCCTACCTTGTTCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252501 lncRNA upstream 53023 2023879 ~ 2024712 (+) False LOC122331469
TU252498 lncRNA upstream 124662 1952710 ~ 1953073 (+) True G170504
TU252472 lncRNA upstream 372350 1704650 ~ 1705385 (+) False LOC122331718
XR_006248280.1 lncRNA upstream 456778 1613706 ~ 1620957 (+) True LOC122331742
XR_006248276.1 lncRNA upstream 592510 1481332 ~ 1485225 (+) False LOC122331738
TU252670 lncRNA downstream 96227 2183403 ~ 2183627 (+) True G170639
TU252697 lncRNA downstream 133295 2220471 ~ 2220761 (+) True G170657
TU252702 lncRNA downstream 144971 2232147 ~ 2232355 (+) True G170662
TU252703 lncRNA downstream 148443 2235619 ~ 2235914 (+) True G170663
TU252729 lncRNA downstream 168536 2255712 ~ 2256070 (+) True G170673
XM_043228917.1 mRNA upstream 48571 2023510 ~ 2029164 (+) True LOC122331469
XM_043229235.1 mRNA upstream 364356 1710922 ~ 1713379 (+) True LOC122331724
XM_043229225.1 mRNA upstream 369375 1704578 ~ 1708360 (+) False LOC122331718
XM_043229226.1 mRNA upstream 369375 1704667 ~ 1708360 (+) True LOC122331718
XM_043229224.1 mRNA upstream 425153 1648837 ~ 1652582 (+) False LOC122331716
XM_043229212.1 mRNA downstream 7919 2095095 ~ 2104299 (+) True LOC122331711
XM_043229213.1 mRNA downstream 18677 2105853 ~ 2107989 (+) True LOC122331712
XM_043228920.1 mRNA downstream 55108 2142284 ~ 2145046 (+) True LOC122331475
XM_043228925.1 mRNA downstream 86317 2173493 ~ 2176462 (+) False LOC122331483
XM_043228926.1 mRNA downstream 86331 2173507 ~ 2178281 (+) True LOC122331483
TU252423 other upstream 567678 1464065 ~ 1510057 (+) True G170438
TU252426 other upstream 592350 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other upstream 592350 1482894 ~ 1485385 (+) False LOC122331738
TU252416 other upstream 725093 1351676 ~ 1352642 (+) True G170431
TU252312 other upstream 971844 1105077 ~ 1105891 (+) True G170357
TU252659 other downstream 55104 2142280 ~ 2144513 (+) False LOC122331475
TU252772 other downstream 337981 2425157 ~ 2443584 (+) False LOC122331512
TU252742 other downstream 544201 2631377 ~ 2813039 (+) True G170683
XR_006248197.1 other downstream 765214 2852390 ~ 2897838 (+) False LOC122331570
XR_006248205.1 other downstream 765214 2852390 ~ 2897838 (+) False LOC122331570

Expression Profile