RNA id: TU252498


Basic Information

Item Value
RNA id TU252498
length 364
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G170504
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1952710 ~ 1953073 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

catctggccacgtggtgcaaagacaacaatctgctccttaacaccaccaaaaccaaggagctcattgtggacttcaggaaggtgagaagaggcacgcatgatcccatccacatcaatgggattgctgtggagccagtcccatgcatcaagttcctgggaacccacatctcagatctgtcctggaccaccaacacctccagcctggtcaagaaggctcaccagcgtcttttcttcctgaggaaacttaagaaccagctgtcctcagccatcctggtgaacttctaccgctgtacaatagagagcatcctaacgaactgtgtcacagtctggtatgggagctgctctgttgctgagcgtaaggcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252472 lncRNA upstream 247325 1704650 ~ 1705385 (+) False LOC122331718
XR_006248280.1 lncRNA upstream 331753 1613706 ~ 1620957 (+) True LOC122331742
XR_006248277.1 lncRNA upstream 467485 1463637 ~ 1485225 (+) False LOC122331738
XR_006248276.1 lncRNA upstream 467485 1481332 ~ 1485225 (+) False LOC122331738
XR_006248275.1 lncRNA upstream 601337 1347132 ~ 1351373 (+) True LOC122331737
TU252501 lncRNA downstream 70806 2023879 ~ 2024712 (+) False LOC122331469
TU252503 lncRNA downstream 77153 2030226 ~ 2084111 (+) True G170508
TU252512 lncRNA downstream 124662 2077735 ~ 2087176 (+) False LOC122331715
TU252670 lncRNA downstream 230330 2183403 ~ 2183627 (+) True G170639
TU252697 lncRNA downstream 267398 2220471 ~ 2220761 (+) True G170657
XM_043229235.1 mRNA upstream 239331 1710922 ~ 1713379 (+) True LOC122331724
XM_043229225.1 mRNA upstream 244350 1704578 ~ 1708360 (+) False LOC122331718
XM_043229226.1 mRNA upstream 244350 1704667 ~ 1708360 (+) True LOC122331718
XM_043229220.1 mRNA upstream 300128 1647600 ~ 1652582 (+) False LOC122331716
XM_043229222.1 mRNA upstream 300128 1647600 ~ 1652582 (+) True LOC122331716
XM_043228917.1 mRNA downstream 70437 2023510 ~ 2029164 (+) True LOC122331469
XM_043229219.1 mRNA downstream 124758 2077831 ~ 2081362 (+) True LOC122331715
XM_043229212.1 mRNA downstream 142022 2095095 ~ 2104299 (+) True LOC122331711
XM_043229213.1 mRNA downstream 152780 2105853 ~ 2107989 (+) True LOC122331712
XM_043228920.1 mRNA downstream 189211 2142284 ~ 2145046 (+) True LOC122331475
TU252423 other upstream 442653 1464065 ~ 1510057 (+) True G170438
TU252426 other upstream 467325 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other upstream 467325 1482894 ~ 1485385 (+) False LOC122331738
TU252416 other upstream 600068 1351676 ~ 1352642 (+) True G170431
TU252312 other upstream 846819 1105077 ~ 1105891 (+) True G170357
TU252659 other downstream 189207 2142280 ~ 2144513 (+) False LOC122331475
TU252772 other downstream 472084 2425157 ~ 2443584 (+) False LOC122331512
TU252742 other downstream 678304 2631377 ~ 2813039 (+) True G170683
XR_006248197.1 other downstream 899317 2852390 ~ 2897838 (+) False LOC122331570
XR_006248205.1 other downstream 899317 2852390 ~ 2897838 (+) False LOC122331570

Expression Profile