RNA id: TU252423


Basic Information

Item Value
RNA id TU252423
length 591
RNA type TUCP
GC content 0.36
exon number 2
gene id G170438
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1464065 ~ 1510057 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTATCTATCGTCAGGAGCTAAATGTTACTCAGAGAACCGGAATTAGCTATAACTCTTTTGAACTGCTTGATCTTAATGTTATGCTTATAGATGCAACAAAGAAAtctgttatctctttctcttatctctgtgtatagaccaccaggaccttatgtagatttgcttaaggaatttgctgattttatttcagacttaattaataaaaatagagcacttattatcggtgatttcaacattcatgtagATGACCCAAAGaatacagtaggagctactttcacaaatttattatcatcttttgggctaaagcaaaatgtaatcggcccaactcactgctgtaagcatacattagatttaattatttcgcatggcatcgatgttttagacctagatatcttacctctaagtgatgatatcactgatcatttccttatatcttttaaactctctgtaagtgagattaaccgagccgcacctcgttaccaactgggtagaaccattatcccaaccactgtagataaattcacaaataacctaTCTGACCTGCTCCGCAAACttttattggatctcactgctgcatttgacactatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248275.1 lncRNA upstream 112692 1347132 ~ 1351373 (+) True LOC122331737
TU252415 lncRNA upstream 112908 1350072 ~ 1351157 (+) False LOC122331737
XR_006248274.1 lncRNA upstream 137159 1325054 ~ 1326906 (+) True LOC122331736
TU252403 lncRNA upstream 233010 1230846 ~ 1231055 (+) True G170422
TU252399 lncRNA upstream 243705 1214429 ~ 1220360 (+) True G170418
XR_006248280.1 lncRNA downstream 103649 1613706 ~ 1620957 (+) True LOC122331742
TU252472 lncRNA downstream 194593 1704650 ~ 1705385 (+) False LOC122331718
TU252498 lncRNA downstream 442653 1952710 ~ 1953073 (+) True G170504
TU252501 lncRNA downstream 513822 2023879 ~ 2024712 (+) False LOC122331469
TU252503 lncRNA downstream 520169 2030226 ~ 2084111 (+) True G170508
XM_043229236.1 mRNA upstream 6695 1454894 ~ 1457370 (+) True LOC122331725
XM_043229243.1 mRNA upstream 11802 1448271 ~ 1452263 (+) True LOC122331733
XM_043229229.1 mRNA upstream 16061 1444226 ~ 1448004 (+) True LOC122331720
XM_043229242.1 mRNA upstream 221931 1240549 ~ 1242134 (+) True LOC122331732
XM_043229200.1 mRNA upstream 319548 1139797 ~ 1144517 (+) True LOC122331697
XM_043229234.1 mRNA downstream 18977 1529034 ~ 1531673 (+) True LOC122331723
XM_043229232.1 mRNA downstream 18977 1529034 ~ 1531673 (+) False LOC122331723
XM_043229237.1 mRNA downstream 59870 1569927 ~ 1572065 (+) True LOC122331726
XM_043229218.1 mRNA downstream 123651 1633708 ~ 1645355 (+) False LOC122331714
XM_043229217.1 mRNA downstream 123687 1633744 ~ 1645355 (+) True LOC122331714
TU252416 other upstream 111423 1351676 ~ 1352642 (+) True G170431
TU252312 other upstream 358174 1105077 ~ 1105891 (+) True G170357
TU252301 other upstream 405048 1049092 ~ 1059017 (+) False LOC122331460
TU252300 other upstream 405048 1055085 ~ 1059017 (+) False LOC122331460
TU252137 other upstream 1404720 41422 ~ 59345 (+) False LOC122331690
TU252659 other downstream 632223 2142280 ~ 2144513 (+) False LOC122331475
TU252772 other downstream 915100 2425157 ~ 2443584 (+) False LOC122331512
TU252742 other downstream 1121320 2631377 ~ 2813039 (+) True G170683
XR_006248197.1 other downstream 1342333 2852390 ~ 2897838 (+) False LOC122331570
XR_006248205.1 other downstream 1342333 2852390 ~ 2897838 (+) False LOC122331570

Expression Profile