RNA id: XM_043229232.1


Basic Information

Item Value
RNA id XM_043229232.1
length 1801
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC122331723
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1529034 ~ 1531673 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACACCTGACACCTAACAGCATATCTAGTATTGATGCTAGAGTTCGattgtaaaacttttttgcATGTACTGATTTGTATTGTAACCAATAGAATAAGAGTTTATTGTTACAACCGGCTCCCGTGAGGCTTTAGTTTTAACTGAAAACTGAGCTTCAAACAATAACAACCATAAGAGAGTCTTCTACATTATTCCTGAAGAACTTCCTGAAGAACCTGCGGGCGAGTGAGTGCTTCACGGTTTAGAATAGATACCGACAGCGATTGGAGTGTGATTGGAGTGAGTTGATGGCGGTGGAAAACGTAACACTGAATATTCTCCTTTGACTTCTCTGTGGAAAAAGAGACACAAATCAACTGGACAAAATCTCACGCAAATtgctTTCTCAGGAATTTCTGAAACGATGGCTCAACTTAACATCAGCATCAATGACTCAGCTGCATCCGATGAAGATTTACTCTTTAGGAAGTGGATGGAGTTGGAAAACATTCTTTTTCAGGAATGTTATCCAGAACTTGTATATATCCGTGTCCTTTCAGTCATTGAGATCTCAGCCATGATCTTAACTCTGATCGCCTTGTGTTTCATCATCAAATCCAGGCCTGCTGCTTCGGTTTTTGTTAGTAATTTAATACTTTCAGATCTCGTACAGGTCATTAGTATATTGATAGCAGCAACAATCTCATGGAAAGGTATGCTGCTTGCTGCATATAACTATTCTTTGATGGTGGGTCTGTATTTTATGACATGTGTTGCTTTTGAACGATATCTTCTGATTTGTCATCCTATCTGGTACAAATCTCACCAATCACTCAAactctcttgttttatttctgtgatcatcTGGTTTGTGCCTCTAACCTGTGCAGAAATATACccttatatttatttgagaCCTCTGCCAATGCTTATAGCCTGTTTAATTCCTTATCCCATAATCATTCTCTGTTTTGCTGGCACTTGTCGAGGTCTTTCTCACGCAATATCACTGACTGCTCAGAAGCGCAAATCAATTTTGGGCATTTTGTTCCTGGTGCTGTTGACTTACACATTTCTTGTTCTTCCTTAtgtgtttatgctttttattgaGAATTATTCATTGTATTACTACggtaattacttttttgttgagAAAATGTACCGCTATGCACGAATGATTGTGTGTCTGAATCCACTTGCTGACTGTTTTCTGTACATGTTCATAAGGCCTGATGTTggtaatttgttaaaaaagtctGTTTGCTGCTGTCGTAGACGTCAGAGTTGGAAACGAAACCAGGACGAACACTCTGTAGTGAATCCACAAAACAGCTGCCCTTCTGTAGTGTGCTGTATTTCAGCTCAAAAGCCTTCATCTCATTCACTGAACACCGGCAGCTCAGTTTAACCTGCTGCtaaatgagctgttttatttaattgtaatcagtgttaattttaaaattgcatgaaTAGTTTCTAGTTTAATTCTGTCATGACATTTAAGCTTGTTAGCCCCTACAGCAAATTATCATCATCACCACATCCCATCTACTATCTCTGGCATGTGCACATGAAAAGTATATATGTGTTAAATTAAGTGaactttacaaatgtattaaatattttgcaatctAAAGAGCTTAATGAGCTTGTTGTGCACCGTATAGAGGAGGTGTTCAACTGTAATTATGAAGCTATGGGaatactgtacatttcaatAATTTCTCTATTCTGCATCAGTATCCTGTGTCATTATCAAGAGTATTGCATAAGCATGCATGTGatgctgcattctcaaaaccttgGAAAGGTGAAGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248277.1 lncRNA upstream 43809 1463637 ~ 1485225 (+) False LOC122331738
XR_006248276.1 lncRNA upstream 43809 1481332 ~ 1485225 (+) False LOC122331738
XR_006248275.1 lncRNA upstream 177661 1347132 ~ 1351373 (+) True LOC122331737
TU252415 lncRNA upstream 177877 1350072 ~ 1351157 (+) False LOC122331737
XR_006248274.1 lncRNA upstream 202128 1325054 ~ 1326906 (+) True LOC122331736
XR_006248280.1 lncRNA downstream 82033 1613706 ~ 1620957 (+) True LOC122331742
TU252472 lncRNA downstream 172977 1704650 ~ 1705385 (+) False LOC122331718
TU252498 lncRNA downstream 421037 1952710 ~ 1953073 (+) True G170504
TU252501 lncRNA downstream 492206 2023879 ~ 2024712 (+) False LOC122331469
TU252503 lncRNA downstream 498553 2030226 ~ 2084111 (+) True G170508
XM_043228916.1 mRNA upstream 39634 1485664 ~ 1489400 (+) True LOC122331467
XM_043229236.1 mRNA upstream 71664 1454894 ~ 1457370 (+) True LOC122331725
XM_043229243.1 mRNA upstream 76771 1448271 ~ 1452263 (+) True LOC122331733
XM_043229229.1 mRNA upstream 81030 1444226 ~ 1448004 (+) True LOC122331720
XM_043229242.1 mRNA upstream 286900 1240549 ~ 1242134 (+) True LOC122331732
XM_043229237.1 mRNA downstream 38254 1569927 ~ 1572065 (+) True LOC122331726
XM_043229218.1 mRNA downstream 102035 1633708 ~ 1645355 (+) False LOC122331714
XM_043229217.1 mRNA downstream 102071 1633744 ~ 1645355 (+) True LOC122331714
XM_043229220.1 mRNA downstream 115927 1647600 ~ 1652582 (+) False LOC122331716
XM_043229222.1 mRNA downstream 115927 1647600 ~ 1652582 (+) True LOC122331716
TU252423 other upstream 18977 1464065 ~ 1510057 (+) True G170438
TU252426 other upstream 43649 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other upstream 43649 1482894 ~ 1485385 (+) False LOC122331738
TU252416 other upstream 176392 1351676 ~ 1352642 (+) True G170431
TU252312 other upstream 423143 1105077 ~ 1105891 (+) True G170357
TU252659 other downstream 610607 2142280 ~ 2144513 (+) False LOC122331475
TU252772 other downstream 893484 2425157 ~ 2443584 (+) False LOC122331512
TU252742 other downstream 1099704 2631377 ~ 2813039 (+) True G170683
XR_006248197.1 other downstream 1320717 2852390 ~ 2897838 (+) False LOC122331570
XR_006248205.1 other downstream 1320717 2852390 ~ 2897838 (+) False LOC122331570