RNA id: XR_006248274.1


Basic Information

Item Value
RNA id XR_006248274.1
length 903
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC122331736
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1325054 ~ 1326906 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGTGAAGGACACCTAACAGCTTCTCTAGTATTACTACTTAAAATAATCGGCTAAGTTACAGGTTTTACaatcaaactttatttttgccTGTAGTGCTTTGTATtgtaaccaaaaaaataagagtttattaaaagtaaactCTCACGAGAGCCAATTGTAACTAAAAACTGAGCTTCAAACAAGGGAGTCTTCTACATCATTCCTGAAGAACTTCAACCTGCGGGCAACATACAACTGATGCTCAATAAACACAACTCACTACAGCTTCTCCAGTCTTGCTCCTTACAAGACAATCAACAGCAGTTGGAGTGTGTTTTTATGAGTTGATGGCTGTAGAAAAACATGACGCTGAAAGCTTTCCTTTGACTGATGAAACATGATGAAACATAAACCCACTGGACAGGTTCTAACATAATTTGCTTTCTCAGGAACTTCTGAAACGATGGCTCAACTTAACATCAGCATCAATGACTCGGCTGCATCCGATGATGATTTACTCTTTAGGAATTTAATGGAACTCCAAAGTACTCATTTTATGGAAGGTTATCCAGAACTTGTATATATCCGTGTCCTTTCAGTCATTGAGATCCTAGTCATGATCTTAACTCTGATCGCCTTGTGTTTCATCATCAAATCCAGGCCTGCTGCTGCAGTTTTTGTTAGTAATTTAATACTTTCAGATCTCGTACAGGTCATTAGTATATTAATAGCAGCAACAATCTCATGGCATGAGAGACTGGTTCCGGCATATAACTATTCTTTGATGGTGGGTCTGTATTTTATGGCATGTGTTGCTTTTGAACGATATCTTCTGATTTGTCATCCTATCTGGTACAAATCTCACCAATCACTCAAactctcttgttttatttctgtgatcatcTGGTTTGTGCCTCTAAC

Function

GO:

id name namespace
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252403 lncRNA upstream 93999 1230846 ~ 1231055 (+) True G170422
TU252399 lncRNA upstream 104694 1214429 ~ 1220360 (+) True G170418
TU252398 lncRNA upstream 112141 1212681 ~ 1212913 (+) True G170417
TU252396 lncRNA upstream 150036 1174748 ~ 1175018 (+) True G170415
TU252388 lncRNA upstream 176849 1147859 ~ 1148205 (+) True G170410
XR_006248275.1 lncRNA downstream 20226 1347132 ~ 1351373 (+) True LOC122331737
TU252415 lncRNA downstream 23166 1350072 ~ 1351157 (+) False LOC122331737
XR_006248277.1 lncRNA downstream 136731 1463637 ~ 1485225 (+) False LOC122331738
XR_006248276.1 lncRNA downstream 154426 1481332 ~ 1485225 (+) False LOC122331738
XR_006248280.1 lncRNA downstream 286800 1613706 ~ 1620957 (+) True LOC122331742
XM_043229242.1 mRNA upstream 82920 1240549 ~ 1242134 (+) True LOC122331732
XM_043229200.1 mRNA upstream 180537 1139797 ~ 1144517 (+) True LOC122331697
XM_043228931.1 mRNA upstream 220930 1098821 ~ 1104124 (+) True LOC122331492
XM_043229205.1 mRNA upstream 232671 1084988 ~ 1092383 (+) True LOC122331707
XM_043228910.1 mRNA upstream 266004 1055086 ~ 1059050 (+) True LOC122331460
XM_043229229.1 mRNA downstream 117320 1444226 ~ 1448004 (+) True LOC122331720
XM_043229243.1 mRNA downstream 121365 1448271 ~ 1452263 (+) True LOC122331733
XM_043229236.1 mRNA downstream 127988 1454894 ~ 1457370 (+) True LOC122331725
XM_043228916.1 mRNA downstream 158758 1485664 ~ 1489400 (+) True LOC122331467
XM_043229234.1 mRNA downstream 202128 1529034 ~ 1531673 (+) True LOC122331723
TU252312 other upstream 219163 1105077 ~ 1105891 (+) True G170357
TU252301 other upstream 266037 1049092 ~ 1059017 (+) False LOC122331460
TU252300 other upstream 266037 1055085 ~ 1059017 (+) False LOC122331460
TU252137 other upstream 1265709 41422 ~ 59345 (+) False LOC122331690
TU252416 other downstream 24770 1351676 ~ 1352642 (+) True G170431
TU252423 other downstream 137159 1464065 ~ 1510057 (+) True G170438
TU252426 other downstream 154430 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other downstream 155988 1482894 ~ 1485385 (+) False LOC122331738
TU252659 other downstream 815374 2142280 ~ 2144513 (+) False LOC122331475

Expression Profile