RNA id: TU252403


Basic Information

Item Value
RNA id TU252403
length 210
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G170422
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1230846 ~ 1231055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAGAAAGAATTAGAAACACCCTTGGAACACGTCCGAGTACTCTAATATATCCCAATgtaaacagaaagatggagaagatgtgCAGGAATACAGAGCACGTctagaagaagtttttaggGTTAACAGTGGGGTTCAGTATAGTGCTGATGAGGCTGGTGCAtaccaacagcaattaaaacaagcacTCCTTTTAGGATTCAATCCCCAG

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko00710 Carbon fixation in photosynthetic organisms

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252399 lncRNA upstream 10486 1214429 ~ 1220360 (+) True G170418
TU252398 lncRNA upstream 17933 1212681 ~ 1212913 (+) True G170417
TU252396 lncRNA upstream 55828 1174748 ~ 1175018 (+) True G170415
TU252388 lncRNA upstream 82641 1147859 ~ 1148205 (+) True G170410
TU252315 lncRNA upstream 100573 1126924 ~ 1130273 (+) True LOC122331487
XR_006248274.1 lncRNA downstream 93999 1325054 ~ 1326906 (+) True LOC122331736
XR_006248275.1 lncRNA downstream 116077 1347132 ~ 1351373 (+) True LOC122331737
TU252415 lncRNA downstream 119017 1350072 ~ 1351157 (+) False LOC122331737
XR_006248277.1 lncRNA downstream 232582 1463637 ~ 1485225 (+) False LOC122331738
XR_006248276.1 lncRNA downstream 250277 1481332 ~ 1485225 (+) False LOC122331738
XM_043229200.1 mRNA upstream 86329 1139797 ~ 1144517 (+) True LOC122331697
XM_043228931.1 mRNA upstream 126722 1098821 ~ 1104124 (+) True LOC122331492
XM_043229205.1 mRNA upstream 138463 1084988 ~ 1092383 (+) True LOC122331707
XM_043228910.1 mRNA upstream 171796 1055086 ~ 1059050 (+) True LOC122331460
XM_043228934.1 mRNA upstream 216938 1012310 ~ 1013908 (+) True LOC122331500
XM_043229242.1 mRNA downstream 9494 1240549 ~ 1242134 (+) True LOC122331732
XM_043229229.1 mRNA downstream 213171 1444226 ~ 1448004 (+) True LOC122331720
XM_043229243.1 mRNA downstream 217216 1448271 ~ 1452263 (+) True LOC122331733
XM_043229236.1 mRNA downstream 223839 1454894 ~ 1457370 (+) True LOC122331725
XM_043228916.1 mRNA downstream 254609 1485664 ~ 1489400 (+) True LOC122331467
TU252312 other upstream 124955 1105077 ~ 1105891 (+) True G170357
TU252301 other upstream 171829 1049092 ~ 1059017 (+) False LOC122331460
TU252300 other upstream 171829 1055085 ~ 1059017 (+) False LOC122331460
TU252137 other upstream 1171501 41422 ~ 59345 (+) False LOC122331690
TU252416 other downstream 120621 1351676 ~ 1352642 (+) True G170431
TU252423 other downstream 233010 1464065 ~ 1510057 (+) True G170438
TU252426 other downstream 250281 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other downstream 251839 1482894 ~ 1485385 (+) False LOC122331738
TU252659 other downstream 911225 2142280 ~ 2144513 (+) False LOC122331475

Expression Profile