RNA id: TU252315


Basic Information

Item Value
RNA id TU252315
length 2283
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id LOC122331487
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1126840 ~ 1130273 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCTTGCTTCACCGACTCACGACTTCACGGATCatccttgtttgttacggtaaccgattactactgaactttgatattgaccattgcctccattcgactttgcccacggatttccctttgtcTTCTCAAGTGGATTATGAAAACATTGAAAGCGTAACGtatcaaaaaatacaatactataaaaaatataacttgTGCATTATCAACATATTAGTGCACTGCTGCCTCTCACTGCTTcattaatgttattgtttttttgtggctacttgaatattttaattaagtgtttttaaaatcagtaagtaaattgttttatttgcctTAAGTTTTGGTTACTTAATAAAACCTAGTGAGTATAATAACTAAGTACACCTCCCTAAGTAAGGTAAAATATTGGATTTTACAGTGTTACTTTAACGTGTGTCGGGAGAGAGAATGAATTCAGgtgtatataaaacatttcataaaatatcaAGCATGTTTGTGgatattagtaataaaaaaggaaaaactatcaggataaacattttaacataacgGTCACCTAAAAAAGCTCCCCCTCTTCATCTAGAATATCTGAAACTTAAGTGTGAAAGGGTTAACTGTGATCGGGTTTCTAAAGGCAGGCTGACATCGGGATTTATTGAGAGGAAATGACTCCATTTTAGATAAGCACTTCAGctaaacaaaccaaaagcaaaagaaaggtCGAGCGCAAACGTCCTACTGGTAAGTTCATGAAATTCTTAATGTTTCCGCAGTTTTAACAGGTTATAACTTCATACttcacatttacaaatacaaattgatATGATTTTCATAGTAAGAAATTCACAGCTCTAATTATTTTCACAATCTAAACATTTAACAACAGCTTTATAAACTGTAGAAAGCCAGGGTAACCTGAAAGCTTCCAGAGCCACGGTTTGTAGCCTACTGCTAATTTATGCTCATTTAATTTGAACTGTGTGCATCTTAAAGACATCAAACACTTTATTCTTAATAAGAGCTAGGTCTTCAAATGTAAAACTGActtcactgtttttgtttttttttatatttttaaacagcgCTTCAAAAAAGTGTACTTTTCTATTTCCTGTATTTGGCCAAAGCGTTCAAGGGACCACGACATACCACTTAGCTGCTGTAATAATACAAAGgcttaatttaaattttcaatacattgtattttaaaataaaggcttTGTTTGTCTCATGCCATTATCTCACCAGCCCCACAAAAATAGTTatgttagttttcttttttactgtcttttttgGTAGTCTAATGAAGACGGACACAGATAGTACTGTAACTACTGTAGTAAAGGTTAATAGTGACCGCTTATCAGATAACGTCTGTCTCAAAGTAACAGAAGACAGATTCTTAATGAAACAGAGAAGTGAATATAAGTATGTAAAGTACATTTATGATATTGATATACGGGAACACCCCAGCTCAAGATAACTATGAAATTGCATCGCTCCTGCCAACGCTGACTGATAAGGGTGGAGAGAATTGTAAACCGTGCACTTAAGCGGCGGATAAAAAGGATAAGAAAGGGTTTAACACAATCCACTGAAGACCCCCTGGCTGTaagtcatttaaacattttataacatatattataataaccGAAATATATCTACAAAATATCTccaaaaaatagctaaaaatattaacgttgcttattaatattgtatGATTAGttcatcattaattaattacttgaCTTGTAAACGAATTAGCAAAACAGTACTGAGCCCTTCCACATTTCCTTGGTTAAGGTCAATGTCTAGTTCTAGCCTTCCTTGTTTGCTCTTCCCATGTTTTGGTCTTTGGTTGCGTATTTTTGGATATCTCTCTCGTTTTGCCTTTTGGACCCTCTTTTGACCGTTGCTTGTGTACCTGCATTATCTCTCTGTAGATTCTAAGAATCTATTTAAAACAGACGTTTTAATAACATAACTTCTGCCATATTTTATCTGCTCGTTATAATAGTGCctaatagttatttatttttggaaagtgTCTTTACGTCAGACGGCAGCGAGCCAGTGAAAGATGATGGCATCTGCTGAGCAGCATAGAGACACACcgcaaaaaaaactgaaacaaaaccaaGGTGATGCTCGCGCTGGAGTTTCCGTTAATCTGACCGCTCAGACAAGAGCATCTGTAAATTTTCCTGTATTTCACGGAAACACCATCGGATCGCTAACCCTCAGCTACAATGATGGAAAAGAGGGAAACAGCTCAGAGACAGAGATGGCAAAA

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252291 lncRNA upstream 253113 859256 ~ 873811 (+) True G170339
TU252283 lncRNA upstream 330137 792637 ~ 796787 (+) True LOC122331504
XR_006248193.1 lncRNA upstream 671503 454502 ~ 455421 (+) True LOC122331505
TU252240 lncRNA upstream 696482 429029 ~ 430442 (+) True G170307
TU252239 lncRNA upstream 709752 413848 ~ 417172 (+) True G170306
TU252388 lncRNA downstream 17586 1147859 ~ 1148205 (+) True G170410
TU252396 lncRNA downstream 44475 1174748 ~ 1175018 (+) True G170415
TU252398 lncRNA downstream 82408 1212681 ~ 1212913 (+) True G170417
TU252399 lncRNA downstream 84156 1214429 ~ 1220360 (+) True G170418
TU252403 lncRNA downstream 100573 1230846 ~ 1231055 (+) True G170422
XM_043228931.1 mRNA upstream 22800 1098821 ~ 1104124 (+) True LOC122331492
XM_043229205.1 mRNA upstream 34541 1084988 ~ 1092383 (+) True LOC122331707
XM_043228910.1 mRNA upstream 67874 1055086 ~ 1059050 (+) True LOC122331460
XM_043228934.1 mRNA upstream 113016 1012310 ~ 1013908 (+) True LOC122331500
XM_043228937.1 mRNA upstream 327653 792637 ~ 799271 (+) False LOC122331504
XM_043229200.1 mRNA downstream 9524 1139797 ~ 1144517 (+) True LOC122331697
XM_043229242.1 mRNA downstream 110276 1240549 ~ 1242134 (+) True LOC122331732
XM_043229229.1 mRNA downstream 313953 1444226 ~ 1448004 (+) True LOC122331720
XM_043229243.1 mRNA downstream 317998 1448271 ~ 1452263 (+) True LOC122331733
XM_043229236.1 mRNA downstream 324621 1454894 ~ 1457370 (+) True LOC122331725
TU252312 other upstream 21033 1105077 ~ 1105891 (+) True G170357
TU252301 other upstream 67907 1049092 ~ 1059017 (+) False LOC122331460
TU252300 other upstream 67907 1055085 ~ 1059017 (+) False LOC122331460
TU252137 other upstream 1067579 41422 ~ 59345 (+) False LOC122331690
TU252416 other downstream 221403 1351676 ~ 1352642 (+) True G170431
TU252423 other downstream 333792 1464065 ~ 1510057 (+) True G170438
TU252426 other downstream 351063 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other downstream 352621 1482894 ~ 1485385 (+) False LOC122331738
TU252659 other downstream 1012007 2142280 ~ 2144513 (+) False LOC122331475

Expression Profile