LOC122331500 (LOC107559517,LOC107717910)


Basic Information

Item Value
gene id LOC122331500
gene name LOC107559517,LOC107717910
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1012310 ~ 1013908 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228934.1
cactATAATTAGGAGCAGATCCTAGAGCTGACTATACAAGGTTTTGTGTAGAAATGTCTACTATTACAGGAAATCTGAGGATTGTGCTGCTGGGCAAAACTGGATCAGGAAAGAGTGCTACAGGAAACACAATTCTGGGCAGAAATGCGTTTTTTGAAGACCTCAATCCAGAATCAGTTACTCAGGATTGTGAGATGAGAAACTCAAAAATAGGTTCAAGGAATGTCGCCATAATTGACACTCCAGGACTGTTTGACACATGGATGGGTGAAAAGAAGGATGTGAAATCTGAAATGATGACTGAAGACAAACTGAAGGCTAAAATAGCGGAGTGCATGGCGTTGTCTGCTCCTGGTCCTCACGTGTTCCTGCTGGTCATCAGACTGGATCAGAGGTACACAGATGAAGAGAAGAACGCAGTAAAATGGGTTCAGAAGAACTTTGGAGAAGAAGCATCACGCTACGTCTTCACTCTCTTCACTCATGCCAAATATCTGAAgaataaaacactgaaggaTCATGTAGAAGAGAATGAAGATCTGCGAAACTTTGTTATTAGCTGCGCCGGCAAATATCATTCATTAGAAAATGACCACAGAGCAAATCGGTCTCAGGTCAAAGAACTACTGGAAAAGATGGATAAAATGGTGGAGAGGAACGCAGGAAAGTACTACACTCGTTCTGTGTATACACATGTCCAGAGAAAATTAATCTTTGAAAAAGTAACCAGTGGCTTGTACAGTAATGTTGAAAAAAGATTATCATTCATAGTGGCAGTAGTAGCTGTAGTAGTAGCTATTGGCATCTTTATGCATGTTAGAAATTATTAGAAGTGCATCACTTTTATTCAGTCAGGAGggatgtttaaaaagaaaacgtttGTTGACCAGATCCCTACTGGAGTcgtttaatgaaatgaaaatatttctagtAATGCGCAAAGAGCTTGTTTATTAGGtctgaacaaataaacattttgtttattatttttattgttatgaatAAAGTAACACTCATA

Function

NR:

description
PREDICTED: GTPase IMAP family member 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228934.1 True 1018 mRNA 0.39 2 1012310 1013908

Neighbor

gene id symbol gene type direction distance location
LOC122331454 LOC107747346,LOC107559514 coding upstream 246563 753035 ~ 765747 (+)
LOC122331495 LOC107741121,LOC107692853,LOC107574023 coding upstream 308321 702614 ~ 703989 (+)
LOC122331679 NA coding upstream 742312 268643 ~ 269998 (+)
LOC122331441 NA coding upstream 743648 267169 ~ 268662 (+)
LOC122331680 NA coding upstream 753787 254047 ~ 258523 (+)
LOC122331707 LOC107747346,LOC107729629,LOC107559521 coding downstream 71080 1084988 ~ 1092383 (+)
LOC122331492 LOC107747346,LOC107729629,LOC107559521 coding downstream 84913 1098821 ~ 1104124 (+)
LOC122331697 NA coding downstream 125889 1139797 ~ 1144517 (+)
LOC122331732 LOC107728143 coding downstream 226641 1240549 ~ 1242134 (+)
LOC122331720 LOC107558504,LOC107575635,LOC107711457 coding downstream 430318 1444226 ~ 1448004 (+)
G170339 NA non-coding upstream 138499 859256 ~ 873811 (+)
G170304 NA non-coding upstream 291700 409504 ~ 720610 (+)
LOC122331505 NA non-coding upstream 556889 454502 ~ 455421 (+)
G170307 NA non-coding upstream 581868 429029 ~ 430442 (+)
G170306 LOC107747346,LOC107729629,LOC107559521 non-coding upstream 595138 413848 ~ 417172 (+)
LOC122331487 NA non-coding downstream 112932 1126840 ~ 1130273 (+)
G170410 NA non-coding downstream 133951 1147859 ~ 1148205 (+)
G170415 NA non-coding downstream 160840 1174748 ~ 1175018 (+)
G170417 NA non-coding downstream 198773 1212681 ~ 1212913 (+)
G170418 NA non-coding downstream 200521 1214429 ~ 1220360 (+)
LOC122331504 LOC107747346,LOC107729629,LOC107559521 other upstream 213039 792637 ~ 799271 (+)
LOC122331683 NA other upstream 935173 75300 ~ 77137 (+)
LOC122331690 LOC107575684,LOC107720835 other upstream 950634 41422 ~ 61676 (+)
LOC122331460 LOC107559515,LOC107747346,LOC107559514 other downstream 35184 1049092 ~ 1059050 (+)
G170357 NA other downstream 91169 1105077 ~ 1105891 (+)
G170431 NA other downstream 337768 1351676 ~ 1352642 (+)
LOC122331738 NA other downstream 449729 1463637 ~ 1485385 (+)
G170438 NA other downstream 450157 1464065 ~ 1510057 (+)

Expression


Co-expression Network