LOC122331707 (LOC107747346,LOC107729629,LOC107559521)


Basic Information

Item Value
gene id LOC122331707
gene name LOC107747346,LOC107729629,LOC107559521
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1084988 ~ 1092383 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229205.1
AATCTCGCAGGTGGagactgaaaataaagacaaactgAAAATGGCAGAAAGACTTTCTGATATACGGATTGTGCTGTTGGGCAACACTGGATCAGGAAAAAGTGCATCAGGAAACACCATCCTGAATGAAGACCTTTTTGATGCGAAAAACTCTACAGGATCAGTTACAGAAAACTGTATCAAACAAGAAGCAATTGTGGATGGACGCAGCATATCAGTTATTGACTGTCCAGGTCTGTTTGACACTCGAGATCAGAGTAAAGAAATGCTGCGACATGTAACGAGGCAGTGCATGAACCTATCTTATCCTGGGCCTCATGCATTTCTGCTGGTCATGAAACTGGGTGTGAAATTTACAGAGCAGGAGAAGAATGTTATAAAATGGATTCAGGAGAACTTTGGAGAAGATGCCATCAACTACACCATCATTCTGTTCACTCATGCTGACAAGCTGAACAGCAAGCCTATAGAGACATATATTGGTAAAAGCAATGAGCTAATGCAATTGATCAAGGCCTGTTGGGGAAGATATCACTCATTcaacaatgagaacagaaataATCGAGATCAGGTCACAGAACTTCTGCAAATGATACGtaaaatggttctttttaatGGAGGGAAGCAGTATGCTtttcagatatataaataaaagctaagcCATAAGCTCAGCTTTAAAAGACGCTGGGGAAAAAATTGTACTGAGTAGCATTTTGTGACAGTAAAAATATGTTCCAATAATTTAGATCAGATTAACAagcagaattacatttttgagaTTTGCTGCCTTTTTTTTACTATCACATGGCACACGATATACAATAACATTCACTGTAAtgttaataatgattttatcacataatacagattttttagtatatttaagcCTTtcgtttttcttctttcatttattttaaacagctgaTA

Function

NR:

description
PREDICTED: GTPase IMAP family member 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229205.1 True 927 mRNA 0.37 2 1084988 1092383

Neighbor

gene id symbol gene type direction distance location
LOC122331500 LOC107559517,LOC107717910 coding upstream 71080 1012310 ~ 1013908 (+)
LOC122331454 LOC107747346,LOC107559514 coding upstream 319241 753035 ~ 765747 (+)
LOC122331495 LOC107741121,LOC107692853,LOC107574023 coding upstream 380999 702614 ~ 703989 (+)
LOC122331679 NA coding upstream 814990 268643 ~ 269998 (+)
LOC122331441 NA coding upstream 816326 267169 ~ 268662 (+)
LOC122331492 LOC107747346,LOC107729629,LOC107559521 coding downstream 6438 1098821 ~ 1104124 (+)
LOC122331697 NA coding downstream 47414 1139797 ~ 1144517 (+)
LOC122331732 LOC107728143 coding downstream 148166 1240549 ~ 1242134 (+)
LOC122331720 LOC107558504,LOC107575635,LOC107711457 coding downstream 351843 1444226 ~ 1448004 (+)
LOC122331733 LOC107676291 coding downstream 355888 1448271 ~ 1452263 (+)
G170339 NA non-coding upstream 211177 859256 ~ 873811 (+)
G170304 NA non-coding upstream 364378 409504 ~ 720610 (+)
LOC122331487 NA non-coding downstream 34457 1126840 ~ 1130273 (+)
G170410 NA non-coding downstream 55476 1147859 ~ 1148205 (+)
G170415 NA non-coding downstream 82365 1174748 ~ 1175018 (+)
G170417 NA non-coding downstream 120298 1212681 ~ 1212913 (+)
G170418 NA non-coding downstream 122046 1214429 ~ 1220360 (+)
LOC122331460 LOC107559515,LOC107747346,LOC107559514 other upstream 25938 1049092 ~ 1059050 (+)
LOC122331504 LOC107747346,LOC107729629,LOC107559521 other upstream 285717 792637 ~ 799271 (+)
LOC122331683 NA other upstream 1007851 75300 ~ 77137 (+)
LOC122331690 LOC107575684,LOC107720835 other upstream 1023312 41422 ~ 61676 (+)
G170357 NA other downstream 12694 1105077 ~ 1105891 (+)
G170431 NA other downstream 259293 1351676 ~ 1352642 (+)
LOC122331738 NA other downstream 371254 1463637 ~ 1485385 (+)
G170438 NA other downstream 371682 1464065 ~ 1510057 (+)
LOC122331718 NA other downstream 612195 1704578 ~ 1708360 (+)

Expression


Co-expression Network