RNA id: XM_043229242.1


Basic Information

Item Value
RNA id XM_043229242.1
length 1296
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122331732
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1240549 ~ 1242134 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCagatattcacaaaatattttagatgttCAACTGAAAAGTCCGATATGAAAATCATATTGCTGTTCAATAAATTTGTCGAGGTGAGGTTAATGACTGAAGACTCCTCCCCAAAACACAGAGGACAAAAATGTGATACCACTTGATAGAAGATCTTCATATATCTTCATAAACATATTGGATTAAATACTAACAAGATTTGTGTCATTATACAAGCGCAATGAGTGAAAGGAAACATCATGAACGTAGCGAACATGATGAcgattgtaatgtaatttatacgAAACGGCAATGGGTAGGGCCACACCCTGTCGATTTCAATGTTTCAAGTGACATAAATAAGTCGTTGCTCAAAAGAGAAACGTGGAATATCAAAaaggaaatgaacaaaaaaccAAATATCCAACTTGCATCGGTCAATGTTGATTTGCTGGACACCATAAACGTCATTGACACATTCGACAGACCAGCAGATGCCAGCACAAAGGGCAGATATGCTCAGTGTGGAAAATATGCATTAGGCTTCGAAGACAAACCAGGACACCGGATTCCGAAGGCTGGAGTCTACGCGGAAGCAGGAGTGGGTCGTGTTGCTGCTGAAGTGAGTGTATTAGAGGCAGAAGCCAAAGGCCCGAACGCCTCGGCTGGGGTTGGAGCCAGTGTTACTGGAGCTGGAATGATGGCTCGTGCTGAAGTCGGCAGTGTTTCAGCCAAAGCCGGACCTGTTGCTGCAAAACTGGGACTTGGAGTTGATACAGGGGTATCTATTGGTGCGGGTGGGCTCGAGGCAAAATTCCTGGGAACTGGAATTACGTTTGGTCCAAAAACCAGTGTATCTCTGTTGGGCTCAGAGGTTTCATGTTCAGTCATGTAGTTGTTCGAGTTATCTTTGAATAGAGAGGGTAGGAGCTCGGTCACTCACTCTCCGCTGGCCTCGGAAttgctggaggaagtgtctggggagagggaagtctgggcgtccctgcttagactgctCCCCGCGACACGGCCCAGATAAGCCGAAGAAGATGGatgtcttttaaataaactaaggtttagagaaaatattaaattttataatgtaaaatgacatttattaacaataagtgttttatgattaaatacatCGAAAAAGTCATCTTAAAAAATACCATTattaatgatgatgattttttttattacctgtATAGTTATTCAAATGGTGTAAATGTTCTTTGTTCGcattacaatttattcattGACCGACATCTGTCGAGtgtcaatttaaattaaataaacctttCAGTTTAATCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252403 lncRNA upstream 9494 1230846 ~ 1231055 (+) True G170422
TU252399 lncRNA upstream 20189 1214429 ~ 1220360 (+) True G170418
TU252398 lncRNA upstream 27636 1212681 ~ 1212913 (+) True G170417
TU252396 lncRNA upstream 65531 1174748 ~ 1175018 (+) True G170415
TU252388 lncRNA upstream 92344 1147859 ~ 1148205 (+) True G170410
XR_006248274.1 lncRNA downstream 82920 1325054 ~ 1326906 (+) True LOC122331736
XR_006248275.1 lncRNA downstream 104998 1347132 ~ 1351373 (+) True LOC122331737
TU252415 lncRNA downstream 107938 1350072 ~ 1351157 (+) False LOC122331737
XR_006248277.1 lncRNA downstream 221503 1463637 ~ 1485225 (+) False LOC122331738
XR_006248276.1 lncRNA downstream 239198 1481332 ~ 1485225 (+) False LOC122331738
XM_043229200.1 mRNA upstream 96032 1139797 ~ 1144517 (+) True LOC122331697
XM_043228931.1 mRNA upstream 136425 1098821 ~ 1104124 (+) True LOC122331492
XM_043229205.1 mRNA upstream 148166 1084988 ~ 1092383 (+) True LOC122331707
XM_043228910.1 mRNA upstream 181499 1055086 ~ 1059050 (+) True LOC122331460
XM_043228934.1 mRNA upstream 226641 1012310 ~ 1013908 (+) True LOC122331500
XM_043229229.1 mRNA downstream 202092 1444226 ~ 1448004 (+) True LOC122331720
XM_043229243.1 mRNA downstream 206137 1448271 ~ 1452263 (+) True LOC122331733
XM_043229236.1 mRNA downstream 212760 1454894 ~ 1457370 (+) True LOC122331725
XM_043228916.1 mRNA downstream 243530 1485664 ~ 1489400 (+) True LOC122331467
XM_043229234.1 mRNA downstream 286900 1529034 ~ 1531673 (+) True LOC122331723
TU252312 other upstream 134658 1105077 ~ 1105891 (+) True G170357
TU252301 other upstream 181532 1049092 ~ 1059017 (+) False LOC122331460
TU252300 other upstream 181532 1055085 ~ 1059017 (+) False LOC122331460
TU252137 other upstream 1181204 41422 ~ 59345 (+) False LOC122331690
TU252416 other downstream 109542 1351676 ~ 1352642 (+) True G170431
TU252423 other downstream 221931 1464065 ~ 1510057 (+) True G170438
TU252426 other downstream 239202 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other downstream 240760 1482894 ~ 1485385 (+) False LOC122331738
TU252659 other downstream 900146 2142280 ~ 2144513 (+) False LOC122331475

Expression Profile