RNA id: XM_043228910.1


Basic Information

Item Value
RNA id XM_043228910.1
length 427
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122331460
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1049092 ~ 1059050 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGAGAACACCTGAGCAAAACAGGAAATCCCACACAGTAATAATGACTTCAGGTCAAGGTGATCTAAGGATTATTCTCCTGGGTAAAACTGGAGCAGGAAAAAGTGCAACAGGAAACACCATTCTgggcagaaatgtatttaaagagaCCAATGAAACATGTGAGAAACAGAAAGCATATGTGGACGGgaagaatattgttatatttgacACTCCAGGACTATTCAATGCATCTCTCACAAAAGAGCAAGTGAAGGCAGAAATAGAGAGGAGTGTAGAGATGTCTGCTCCTGGTCCTCATGTGTTCCTGCTGGTGATCAAACTGGGAGTGAGATTCACAGAAGAAGAGAGGAACTCAGTGCAATGGATTCAGGAGAAATTTGGAGAAGAGGCTTTACTGCACCATCATTCTGTTTACTCACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252291 lncRNA upstream 181275 859256 ~ 873811 (+) True G170339
TU252283 lncRNA upstream 258299 792637 ~ 796787 (+) True LOC122331504
XR_006248193.1 lncRNA upstream 599665 454502 ~ 455421 (+) True LOC122331505
TU252240 lncRNA upstream 624644 429029 ~ 430442 (+) True G170307
TU252239 lncRNA upstream 637914 413848 ~ 417172 (+) True G170306
XR_006248190.1 lncRNA downstream 67790 1126840 ~ 1130268 (+) False LOC122331487
TU252315 lncRNA downstream 67874 1126924 ~ 1130273 (+) True LOC122331487
TU252388 lncRNA downstream 88809 1147859 ~ 1148205 (+) True G170410
TU252396 lncRNA downstream 115698 1174748 ~ 1175018 (+) True G170415
TU252398 lncRNA downstream 153631 1212681 ~ 1212913 (+) True G170417
XM_043228934.1 mRNA upstream 41178 1012310 ~ 1013908 (+) True LOC122331500
XM_043228937.1 mRNA upstream 255815 792637 ~ 799271 (+) False LOC122331504
XM_043228907.1 mRNA upstream 289339 753035 ~ 765747 (+) True LOC122331454
XM_043228932.1 mRNA upstream 351097 702614 ~ 703989 (+) True LOC122331495
XM_043229184.1 mRNA upstream 785088 268643 ~ 269998 (+) True LOC122331679
XM_043229205.1 mRNA downstream 25938 1084988 ~ 1092383 (+) True LOC122331707
XM_043228931.1 mRNA downstream 39771 1098821 ~ 1104124 (+) True LOC122331492
XM_043229200.1 mRNA downstream 80747 1139797 ~ 1144517 (+) True LOC122331697
XM_043229242.1 mRNA downstream 181499 1240549 ~ 1242134 (+) True LOC122331732
XM_043229229.1 mRNA downstream 385176 1444226 ~ 1448004 (+) True LOC122331720
TU252137 other upstream 995741 41422 ~ 59345 (+) False LOC122331690
TU252312 other downstream 46027 1105077 ~ 1105891 (+) True G170357
TU252416 other downstream 292626 1351676 ~ 1352642 (+) True G170431
TU252423 other downstream 405015 1464065 ~ 1510057 (+) True G170438
TU252426 other downstream 422286 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other downstream 423844 1482894 ~ 1485385 (+) False LOC122331738

Expression Profile