RNA id: XM_043229218.1


Basic Information

Item Value
RNA id XM_043229218.1
length 5062
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC122331714
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1633708 ~ 1645355 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTTATCAGAGAACCTACATTTTCTGCTTATAACTGAACTGATGAAAGAGGGAGAGGGAAGCCTTCCATATGCAGgcACAATAAAGGACATTGGAACAATAGAAATCAGTTCAGATTTCAACACCTTAAGAAGAATAAAAActtgaaatatgaataatatattccAAAAGCTCTGTGTTGAAGGAAAGCATCTCAATAAACTCGGAGGTGCAGATTTTCTTCAGATAACTGAATATTCATTACAGTCAAGTGAGTATTATTCTGAAGAGGAGCTGATTCAGACTTTCCTTCAAAAATTACTGATGATGAACTACAGAGCaagatacattaaaattaatgagACCAACAAACAGGatcaaacacaacaaacagaCAATGATTTACCTGAAGAAGAGACTGACTTTTTTGATGACATTTTCGAAAAACCTCCACCAGACAAAGCATCAATTCAGTCCGATCCTGTTCACCCAATGGATGTTCAGATGGCCGTGTTTCATTGTGCTGATGGTTTCCTGAAGCAGCTGATGGTGACTAAACTTTCCCAGTGTCAGTATGCTCTGCCTCTGCTTGTTCCTGATCCATTCACACAACAGATTGAGTTTCCTCTCTGGACATTCAGACAAATCAACAAGAGCTGGAAcatgaaaaacacagacaatgaAATTATCAGTAAAACCCAGTCAATCTATAATGCAAAAACCCCAATGGTGTGTTTCTTTAGGTTTGGTTCTTTGTCTTCATCCAAATCTCAACTGATGAACAACCTGATCAATGAGACCCACAACACGTTCTTTCACAGGAACTGTCCAGGAAGCAGCAGAACCAGAGTCCTGATGGATGGAGTGGTGGAGATTGCCTGGTACTGTCCTTCTGGAGCAAAGACAGATAAATTTACTGACTGTGTGGCATTCTGTAATCTACATGGTGATGCAGGAAAACATGAGAAACAACTGCAGATCCTTACTGAAATGGCATCAATCAATGTTGTTGTTCTGCCACGACTGGAGAGGAATGACAGACATGCAGCAAAAATCCAAAACCTGTACAAAGACAGAAAGCCACTCATTTGTCTCATTGATGAGAATAATTCTTCAGTAAGTAAGACAAATAAAGGGAAATTCAAAATTGGTTTGAAAGACAGAAATCAGGCAGATGTATCTGAAGAACTCAGAAAAGCCATAAATGCTTGTCTCTTAGAATCGTCTTCCAGTTTCAGACTTGAAGATGTGTCCGAACACTCAGATATCACAGTAgatgaggaagatgatgatgactgtaagagaggaagagaagcagCACAGCAGATGATCAGTATGCTAAAGAtgaaagagctgataaaaatcAAAGAATCTTTTCTGCCTCATCAGGGGAAACTGTGGCATCAGTGGTGTCAGAAGAACAAAGAACTACATCGACCTCAAGGAGAATGGattgaaatggaaataaatacaaagaaaacacaaatgaataaaatccgCAAACAGCAGCATGAATTTGACATCAGCCATTTTATCAAGTGCTTTATTGAACAAATATACTCCTATGATAGAATTGAGAAGATGTTTTTTCTCAAATGGTTTAGAATTCTCCTGGATGAACATACATCAGCTGATATTTCTGCTCTACGCCACAATTATCATAAAAAGTGGTCAACAGTCTTACAACTGAAAGAGAGGCATGCTAAGTCAGAACAGCTTGAAACTGAACAAACGGAACTTGAGACAATAGCTGAGGAACTTCAAGCTGCAACCTTTGGTTTAGAGCACATCATGAGGGATTTTGGACAAATCTTTGAATCttgttcatctgtaaataagaACAAGGAAGACCTGCAGGTTCACTTCTCTTCTCTCCCGAGTCTCGCAGCAGAGATGATCATCTCTGGATTTCCACTGGAGCTGATGGATGGAGATGCTGCTCATGTTCCTTTGGTGTGGATTTCTGCTGTTTTAGAACAACTAACCCAGAAACTGGGAGACCACACCAGAATCTTCATCCTCTCAGTTTTAGGGATTCAGAGTTCTGGGAAATCCACCATGCTGAATGCCATGTTTGGACTTGATTTTGCCGTCAGTGCTGGCAGATGCACCAAAGGAGCTTTCATGCAGCTGGTCAGAGTTTCAGATGAGATGAAAACACAGATGAACATTGACTATATTCTGGTTGTTGACACTGAGGGTCTTCGTGCTCCAGAACTAGTTGGAAAATCAACAAGACATCATGACAATGAATTTGCCACATTTGTTATTGGTCTTGCAAATCTAACACTGATCAACATTTTTGGAGAAAACACAGCTGAGATGCAGGACATTCTTCAGATTGTTGTTCAGGCCTTTATGAGGATGAAGAAGGTCAGACTGAATCCCAGCTGTGTCTTTGTGCACCAAAACGTTGCAGATGTTGCAGCTAAAGAAAAAACCATGGAAGCAAGAAGACAACTGCTGAAGAAGTTAGATATGATGACAAAACTCGCTGCTAAAGAGGAAGTCTATGACGCAGAAACTTTCAGTGATGTCATTAAATTTGATGTTAAGAATGATGTAAAGTATTTTGCTCAATTCTGGGAGGGAAACCCACCCATGGCAACACCAAATCCAAACTACTGTGAAAACATTCAAGAACTGAAGAAATGTATCATGTCTCATGCTTCCAAATCACACAGAATCCTGCTTAAAGACTTCAAAACGCATATTAAAGATCTCTGGGAGGCTTTActtaatgaaaattttgtctTCAGCTTCAGAAACACTCTGGAGATTTCAGTCTACAGGAAATTGGAGAATGAATACAGCAAGTGGTCTTGGAGTCTTTACAATGCCAAGTTAAAAGTTGAGAATAAACTacacaacaaaatacaaaatgaagtAATTCATGAAGTTGAGGAAACTTACCTTCTAAGAGAACTGAACAACACAAGTGAAGAAGTGGAAAAATCAATGTCAGAATTCTTTGAGAAAGACACATATGCAGAAATACTGATTCAGTGGAAAAcatcatttgaaaacaaaatcaaagaccttaagaaaaacattgtgagggaaacaaagacaaacattaacaaaattcTTAATCATCAGGTCCTTAAGAAACGCCATGATCAGATAACACATCTTGAAAACACTCTCTTTGGAACAAGCAAAGAACTTGCCTTAAATTTCAAAGGCAAAGCCAATGatgaagaaacactgaaaaaagagtttaatttgttttggaaaatgaaCATAAAGATCATCAGTGACAATCCATCAATCAGAGACATTGGCATAATTAACGCGAAAGAATTATTCGATAAGAAAAAAGATGAGCACTACAGTATTTTCCAGAAATACTGTAATGGAGCAACACCAGATGCTGTTTTTGGTGAGATCATCTGTCAGAAACTTAAAGAGCCCATTGAGCAGAGTGTCTATAAGAAGACAGCTAGGGATCTGACAGATGAAATTAGATCAAAGTGTGAATCACTGAATGGAAGCAGATCAAATCTGGAGAAACACATCCTAAAGACGCTGGCAGAAGAGGAAAATTTTGACAAATACATGAACTACATTAAAACTCCCAGAGATCACTTCAAGAGATTCATCAGAGATAAAGTCGGTCGTTACATTAATGATCAGTTCAGTCTCAGTGTTTTACTCAAGATGAAGGAGAACACTAAACTCCTGCAGCAGGAGATTATAAAAGCAGCTCATAAATCTACTGAGCATGTTCAAGTGAAAACAGATGTTAGTTTGTGGCTAAAGAGTTTCACCCAACAGCTCTCAGATGAGCTGATCTTCTCTGAAAAAGACTTCAGTGGAGTCAAACATGATGATGTTAATGATGTCAACGTTTTAGAAGATGTGATCAGAAAAGAACTTCCTGCTATAATGTCTGACATCAAAAGTAAATTCAACACAAATACTTTTCCAGTAAAGCTAGACCGTAAAGACAGACCAGATGAGCTTCTGATTGATCACTTCTGTCAGTGTTGTTGGGTTCAGTGTCCGTTCTGTAAAGCCATCTGCACCAACACCATAGAAAACCATGATGGAGATCACAGTGTTGATATCCATCGTAATATTGGACTAAATGGGTGGTTTTACAGAGGAACAACAAACTTGTCTATCACTATATGCACTTCAGGCGTAGCAAGTGATCGATTTTTTTATCCTGATGCTTCAGATGTCAAATTTCCTTGGAGAGAATACAGAAAGGCAGGAGGAGTTTATGCAGACTGGAACATCACCCCTGACATTTCTGAACTGCCCTACTGGAAGTGGGTTGTGTGCAGATTCCAGAAAGATCTGGAAAAATActacaacaaaacatttgatgTTTGGAGTAAGATCCCAGACGAATGGAGAacatattcaaaacaaaaagctgTTGAGAGTTtggacaaatacattttctctgCCCAGTCTATTACTCACAGTTTGTGATGagtttcttttcctttttttttttaaattagagaTTCTGAAAGcaatttctgaaaatatatagaagtaaattaaaagaaaagtgatTGAAAGTAAAATGCGTCTCAGAagcctgaaaatgtttttaatatcagtgtatttgatttgtttatggaCAATGTCTAATGTTTGacaaaatagtatttaaaaaaaaaaggttgtattCCAGAATTGTAAACaagaaaactaaaatgtgtACCTCTGtaatagtttaatataataGTTGATTTGCAACAATATGGTAAATAAATGTGGTATATtgatatttccaaaaaaatgaaagtttatgaatagtatatatatatatatatatatatatatatatatagttatgtttaataatgcataactGCATGGATAGGAATTATTGAAGATTTATGTCTCTGAATATGTTTGCTTGTGTAAATATACATTGGTGGTCTCTGGTTAAGCAGAGTTTTAATTTGGGGGTGaaataaacctttaaaacatgtttttaattatggacataattagatttaaaatgctGAGAGTtggtattagtattattatatatgtaggATTATTGGTATGCAGTGCTTtcaatatgcattaaattaataaaaacatgaatcaaTGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248280.1 lncRNA upstream 12751 1613706 ~ 1620957 (+) True LOC122331742
XR_006248277.1 lncRNA upstream 148483 1463637 ~ 1485225 (+) False LOC122331738
XR_006248276.1 lncRNA upstream 148483 1481332 ~ 1485225 (+) False LOC122331738
XR_006248275.1 lncRNA upstream 282335 1347132 ~ 1351373 (+) True LOC122331737
TU252415 lncRNA upstream 282551 1350072 ~ 1351157 (+) False LOC122331737
TU252472 lncRNA downstream 59295 1704650 ~ 1705385 (+) False LOC122331718
TU252498 lncRNA downstream 307355 1952710 ~ 1953073 (+) True G170504
TU252501 lncRNA downstream 378524 2023879 ~ 2024712 (+) False LOC122331469
TU252503 lncRNA downstream 384871 2030226 ~ 2084111 (+) True G170508
TU252512 lncRNA downstream 432380 2077735 ~ 2087176 (+) False LOC122331715
XM_043229237.1 mRNA upstream 61643 1569927 ~ 1572065 (+) True LOC122331726
XM_043229234.1 mRNA upstream 102035 1529034 ~ 1531673 (+) True LOC122331723
XM_043229232.1 mRNA upstream 102035 1529034 ~ 1531673 (+) False LOC122331723
XM_043228916.1 mRNA upstream 144308 1485664 ~ 1489400 (+) True LOC122331467
XM_043229236.1 mRNA upstream 176338 1454894 ~ 1457370 (+) True LOC122331725
XM_043229220.1 mRNA downstream 2245 1647600 ~ 1652582 (+) False LOC122331716
XM_043229222.1 mRNA downstream 2245 1647600 ~ 1652582 (+) True LOC122331716
XM_043229221.1 mRNA downstream 2407 1647762 ~ 1652582 (+) False LOC122331716
XM_043229224.1 mRNA downstream 3482 1648837 ~ 1652582 (+) False LOC122331716
XM_043229225.1 mRNA downstream 59223 1704578 ~ 1708360 (+) False LOC122331718
TU252423 other upstream 123651 1464065 ~ 1510057 (+) True G170438
TU252426 other upstream 148323 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other upstream 148323 1482894 ~ 1485385 (+) False LOC122331738
TU252416 other upstream 281066 1351676 ~ 1352642 (+) True G170431
TU252312 other upstream 527817 1105077 ~ 1105891 (+) True G170357
TU252659 other downstream 496925 2142280 ~ 2144513 (+) False LOC122331475
TU252772 other downstream 779802 2425157 ~ 2443584 (+) False LOC122331512
TU252742 other downstream 986022 2631377 ~ 2813039 (+) True G170683
XR_006248197.1 other downstream 1207035 2852390 ~ 2897838 (+) False LOC122331570
XR_006248205.1 other downstream 1207035 2852390 ~ 2897838 (+) False LOC122331570

Expression Profile