RNA id: XM_043229221.1


Basic Information

Item Value
RNA id XM_043229221.1
length 2427
RNA type mRNA
GC content 0.39
exon number 10
gene id LOC122331716
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 1647600 ~ 1652582 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTAAGAGAAACAGATCTCCTCACATAAAAGATATGTTAAAGCTAATGCTAACAGACAAAGAGTAACAGCTACTCTCTGGAGTGGAGctggatagagagagagagagacaaggaGCCGGCAGACAGatttgaaacATGCTGCTGATCAAAGTCAGATATCTGGACTCCAGGAAATTTATCAGGCTTCAGGATGGATTCACTTTTGCTGACTTTGCTAACGAAGTCCACAGTAGGTTTGGCCTACCACCTGAGACAAATCTACACATTTATGATGACACTGAAACTGAGATAGACGAGGACATTTTACAAGATTTTCTCAACGCGAGACCTGATACATCGCTCATTATTGTTAGAAGAGAGAATGAAGAAATGTTATCAGATGCAACAAGCTGCTCTTGGAGTGACATTTTGTCACTTAGTCATTCATCATGTGAACTTGACCAAATGCCAGAACGCCCTTACAAGAAACCTAAGACGGACGATGCAGCATCTGAGGCAAAAGAGatggTTCATAGTGCCCTAAAGCAGACAAGTGGAGGAGATGCTGTCCTTGCCGAATATGGTTCCAAAAATACGCTTTCAAGTGAAATGAGACGAGTCCTAGTCAACATTGTGGTCGGACATATGGTGGAAAGGCATggGACGATTCCTTCAAGGAACCAGAAGGAGAAGTATGCTCTAGGGGTTGTGACTCTTTTCCCATCACTTAAAGATCCGTTTTCAAAAAAAGGCTATGAACATTTTTATGACGCAGACGGTGGAACTGGATATATTGCATGGCGATTGAAGACTGTTCAGAGGAACACCAAGAAACGAAATAAGCCTAGAATCTCCAAAAGAAGTGAGACTGGTTTGAGTGGACCTTCTTGGAACAGATGTTCCAGCTCCGAGCAGCAGGATGAGGATACTTTAAGAGAGGCAATTGCCTTTCTTACTCAATCCACAGATGAAACACAGATCATACCCAAAATGAGGGAGACTTTTCACTATAGGCATAGTCTTGTTCATGACCCAAACAAGACAACAGACATTCTGAAGACCTTTCCTACCTTTCTAAACACTAAAGGACTTgtgAATCAAGACTTCTCACTACTCTTCAGTTCTGAAACATCGTCCAAGTTGCTTGAAATGTGGGACACCACTTTTAAGGCAAGAATCATCGAAGAAGCCATAGGCTTGACTTTAAACGCTGTTGTGCGTTCGCTTCTTCTGTCAGCAAATAACCAGAGAGAAAGCGAACACTGTTCTGACTGGGACAGTGACATGGCAACATTGCTTTTGCTGCTCCATCTACTTCCACCAACACCTGGAAAGAAAGTTTCAAAAATCAGTGCATCAGATGCCATAAACAGGCTTGTGGTGTATCAGAAGtCTCGCACCAGCCTTGAACAACATCTTCAGCAACGAGAAGGAAGACAGCCATACCTCCTTGCTGTTGGACGAAACCGCAAGCAGATCGAACACTTCTACATAGTTCTGGATAAGAATCTCATCCCCTGTCAGTCGGATACTTCCCTCGGTGCATTCGATGAGCTATTCAAAGcacactttgtttttaatttaacgtACGATGAGGCACTCCTTCATTTTTACACTTTCATTCAGACAACCATCTACATGGTCGACGTAGGGAAAACCAAGGAGTCGCCTAGAGTCAAGGAGTTGAGAGCAAAATTACTGAATTAGCCATGGACGGTTTAAACGCAAATCGTATTTTGTGACTGAGTAGCAACAGTTTGGATCTGAATTACATTCAAACTCTTGTCTTGTTAGGAACTAcccattattacaattatttattggGTTATTGTGCCACAAGATGATCGAAACTGGAATTTGTTGTAAATAATCAACGTTGTCTGTTCTCCAGGGGTTTCTTATGGAATGGCTGTGTCTCTTAGACCTCTAATCAAAGTATAAAACTGGAAAGAGccagaataaaaagaaagtcgttatttattgttttgtctgaATCGAAAAGTTTTTATTTGGACTGTCTTCAAAATCCTGACAATATAAAAGTGATGTGCAGCTTTTGGAAATTATTCATCCAgtgttattgtttataatacatattttgtagATAATTTTGTAGATATtagcatttttgaataaattgcaacttttcttaattataaagaaaatcataaaaaattttGCAAgcgtgcatttaaataaataattaacaatacaattattttcattcatatatttCTAAAAGCATAGGACCTTCATTAATTTTGTTACCGAAAAACCATGGTTGTGTTCGAAATGCCATTCTgtcatactactcttactattTCTGCAATATCCagtatatatgctgtatatagtACGCTAATTTTCTAATATGCAGTATGCTGTATGTTTAATTTGAATAGTATGTTATTTTGTTTGGATGCATAAAATGCCCGTATGACCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248280.1 lncRNA upstream 26805 1613706 ~ 1620957 (+) True LOC122331742
XR_006248277.1 lncRNA upstream 162537 1463637 ~ 1485225 (+) False LOC122331738
XR_006248276.1 lncRNA upstream 162537 1481332 ~ 1485225 (+) False LOC122331738
XR_006248275.1 lncRNA upstream 296389 1347132 ~ 1351373 (+) True LOC122331737
TU252472 lncRNA downstream 52068 1704650 ~ 1705385 (+) False LOC122331718
TU252498 lncRNA downstream 300128 1952710 ~ 1953073 (+) True G170504
TU252501 lncRNA downstream 371297 2023879 ~ 2024712 (+) False LOC122331469
TU252503 lncRNA downstream 377644 2030226 ~ 2084111 (+) True G170508
TU252512 lncRNA downstream 425153 2077735 ~ 2087176 (+) False LOC122331715
XM_043229218.1 mRNA upstream 2407 1633708 ~ 1645355 (+) False LOC122331714
XM_043229217.1 mRNA upstream 2407 1633744 ~ 1645355 (+) True LOC122331714
XM_043229237.1 mRNA upstream 75697 1569927 ~ 1572065 (+) True LOC122331726
XM_043229234.1 mRNA upstream 116089 1529034 ~ 1531673 (+) True LOC122331723
XM_043229225.1 mRNA downstream 51996 1704578 ~ 1708360 (+) False LOC122331718
XM_043229226.1 mRNA downstream 52085 1704667 ~ 1708360 (+) True LOC122331718
XM_043229235.1 mRNA downstream 58340 1710922 ~ 1713379 (+) True LOC122331724
XM_043228917.1 mRNA downstream 370928 2023510 ~ 2029164 (+) True LOC122331469
XM_043229219.1 mRNA downstream 425249 2077831 ~ 2081362 (+) True LOC122331715
TU252423 other upstream 137705 1464065 ~ 1510057 (+) True G170438
TU252426 other upstream 162377 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other upstream 162377 1482894 ~ 1485385 (+) False LOC122331738
TU252416 other upstream 295120 1351676 ~ 1352642 (+) True G170431
TU252312 other upstream 541871 1105077 ~ 1105891 (+) True G170357
TU252659 other downstream 489698 2142280 ~ 2144513 (+) False LOC122331475
TU252772 other downstream 772575 2425157 ~ 2443584 (+) False LOC122331512
TU252742 other downstream 978795 2631377 ~ 2813039 (+) True G170683
XR_006248197.1 other downstream 1199808 2852390 ~ 2897838 (+) False LOC122331570
XR_006248205.1 other downstream 1199808 2852390 ~ 2897838 (+) False LOC122331570

Expression Profile