RNA id: XM_043228920.1


Basic Information

Item Value
RNA id XM_043228920.1
length 1084
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122331475
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 2142280 ~ 2145046 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCAGTCCAAGTTCAGGCACGATGCAAAGCATTATTCCCAAGAGCAAAACCAAAGGTACTGACTTCTGTGGAGTGGACCATTGCTATTATATAATCCGCTCTGATCTCGGCTTATATATGCAGTCAAGCAATTTCAATAAAGGGTCAGACCTCAACATTTTCAGTCTGCACCCTGCATGCCAAAATGGAGACCATTACCTTGGTCATCAGGATGGCTACTTCTACATCATCAAGGGCAATTCTTACCGCAGAGTCACCGATCTGTCGACAGACAGTAGTGCTGTAGTTTACAGTCTTCATCCCAACTGCCGAGGTGGAGACCACTACCTCTCGGGTTTTGGCAATTTTTACATCATCTTCCAAGGAAAGGGCACTTACCGAAGAACAACTAACATGAATCATGACTGGGATGCTGTAGAATAcaagctgcatcccaactgcaGAGACGGTCTGTATTACTGGGGCTTGCGATTCCACTACTACTTCCTCAAGCCGAGTTCAAAGTGGGGAGTTGAATACTACAAAGGTACCAACTTCAACAAAGACGAGTGTGTCAATGTCTACTCTGTTCATCCTGATGTTCTTAACTTCCTGCCTGGTGGGCTGTCAATTACTAAAGGCCCAGCATTTGGGAGGTGGGagaatattaaaactataaataatgatAGCAACACGCCAGTGAAgtggcaaaataaaattaataaaaaggttGGATACAATAAAGAGAAGATGTCCCAGATCACTCACAACTGGAAGATAGCCACGTCAGTCTCGACTGAATCTGGAACCCTTGAAGGGTTAATTGCGAAGTGGCAGTTCTCTTTCTCTGCAGAATATGGAGGTTCACGTGTCAGCACTGAAAAGGAAACCTGGACCGAACTCACTGAAGTGGAAGAACAACTCTCACTCGAGCTGCAGCCAAATCAGAGTTTTTATCTGTGGCAATACAAAATGGGTTTTGGGCAAGAACCTGTGTTGTTCTGTCGTGATTTGAAGATTGACGATGAGCCTAACCCTCCAACTGAAGTCCTCTGCCACCTGCATAATCATAAGAAATATCAGCCCGGTTTACTCCGAGGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252512 lncRNA upstream 55108 2077735 ~ 2087176 (+) False LOC122331715
TU252503 lncRNA upstream 58173 2030226 ~ 2084111 (+) True G170508
TU252501 lncRNA upstream 117572 2023879 ~ 2024712 (+) False LOC122331469
TU252498 lncRNA upstream 189211 1952710 ~ 1953073 (+) True G170504
TU252472 lncRNA upstream 436899 1704650 ~ 1705385 (+) False LOC122331718
TU252670 lncRNA downstream 38357 2183403 ~ 2183627 (+) True G170639
TU252697 lncRNA downstream 75425 2220471 ~ 2220761 (+) True G170657
TU252702 lncRNA downstream 87101 2232147 ~ 2232355 (+) True G170662
TU252703 lncRNA downstream 90573 2235619 ~ 2235914 (+) True G170663
TU252729 lncRNA downstream 110666 2255712 ~ 2256070 (+) True G170673
XM_043229213.1 mRNA upstream 34295 2105853 ~ 2107989 (+) True LOC122331712
XM_043229212.1 mRNA upstream 37985 2095095 ~ 2104299 (+) True LOC122331711
XM_043229219.1 mRNA upstream 60922 2077831 ~ 2081362 (+) True LOC122331715
XM_043228917.1 mRNA upstream 113120 2023510 ~ 2029164 (+) True LOC122331469
XM_043229235.1 mRNA upstream 428905 1710922 ~ 1713379 (+) True LOC122331724
XM_043228925.1 mRNA downstream 28447 2173493 ~ 2176462 (+) False LOC122331483
XM_043228926.1 mRNA downstream 28461 2173507 ~ 2178281 (+) True LOC122331483
XM_043229024.1 mRNA downstream 116279 2261325 ~ 2271136 (+) True LOC122331539
XM_043229137.1 mRNA downstream 176087 2321133 ~ 2329824 (+) False LOC122331586
XM_043229138.1 mRNA downstream 176112 2321158 ~ 2329824 (+) False LOC122331586
TU252423 other upstream 632227 1464065 ~ 1510057 (+) True G170438
TU252426 other upstream 656899 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other upstream 656899 1482894 ~ 1485385 (+) False LOC122331738
TU252416 other upstream 789642 1351676 ~ 1352642 (+) True G170431
TU252312 other upstream 1036393 1105077 ~ 1105891 (+) True G170357
TU252772 other downstream 280111 2425157 ~ 2443584 (+) False LOC122331512
TU252742 other downstream 486331 2631377 ~ 2813039 (+) True G170683
XR_006248197.1 other downstream 707344 2852390 ~ 2897838 (+) False LOC122331570
XR_006248205.1 other downstream 707344 2852390 ~ 2897838 (+) False LOC122331570
XR_006248203.1 other downstream 707344 2852390 ~ 2897838 (+) False LOC122331570

Expression Profile