RNA id: XM_043229024.1


Basic Information

Item Value
RNA id XM_043229024.1
length 3164
RNA type mRNA
GC content 0.34
exon number 4
gene id LOC122331539
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 2261325 ~ 2271136 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGTTCATTTTTCAAGAAGGGgaaagctttaaaacacacactctcttataACACAATGGCACAATTTCTTTACATTGCAATAGATTTTGGAACATCATACAGTGGATATGCCTTCAGCTTTAAGACTGATAAACATCTAGAACAAATTAGACTTCCTTCCTGGGGTATGAATCAAAgtcaaaaaacttttaaaacccCCACCTGCATTTTGTTTGATGAAGAACAGAACTTCCAGAAGTTTGGTTATGATGCtatgaaaacatacacacagttgatgaaaaaagaaacagcaaagAAACACTATCTATTTGAACACTTCAAAATGGAGCTGTATAATAAAAAAATCCACAGAGGTTTGATGATTACAGCATCAAATGGGAAAAGAATGGAGGCTATAAAGGTTTTCTCTGAGAGTCTGCGATACCTAAAGGATCATGCACTGGACAAAATTGAACAAAACACTCAAGGACGAAAGTTCATTGCATCTGATGTGACGTGGGTGTTAACAGTTCCTGCTATCTGGCATGCGGCAGCTAAACAATTCATGAGAGAAGCAGCTGTTGAgGCTGGTCTTGTGACGGATTCTACACCTGAAAGACTCATCTTTGCTCTGGAACCAGAGGCTGCGTCTGTGTTCTGTAAGCAGCTACCAAGTGATCGATTCATAGCAGAAGGAGAGTATGAAGAAAAATTGGAACAGCAACCAGGAAGCCGGTACATGGTTGTAGATTGTGGAGGTGGTACTATTGATATAACAGTCCACGAGGTGCTGGATGACGGCAAATTAAAGGAGCTGCACGCTGCATCAGGAAATGACATGGGTGGACAGTCAGTAGACAAGAATATTATGTCTTTTCTAAAAGACGTTTTCTCAGaggacatttttgaaaaatttatgAGAGAACACCCAAGTGAAGCACTTAGACTGAAGTATGACATTGCACTTATAAAATGTTGTGATGATGTTGTGAGGCTTTCGTGTCCTTACAGCTTACAAGATCTTGCTAAAGGCATACAGAGCACAGAAAGTTATTTTGAGGATGTTGAGGGAGCGGTGTGGGATGATGGTGGAATATTCATTGAACAAGAAAAGCTTAAAAGCTTCTTTGATACCAGCTTCAGTGCTATAGAAAGCACAATTAATCAGATCCTTAAAAACACAGAGCTGAAGATTGAGTACATGTTGTTGGTGGGAGGCTATGCTGAATGTCCATTTCTGAGGAATTTCATGAAGGAGCAATTTGGCAGCGTTTGCAAAATACTTTGCCCTGAACAACCTCAGGCAGTAATTTTAAAGGGAGCGATCCTGTATGGAAAAACACCTTCTGTGGTTAAATCCCGTATTAGTGCTCTCACATATGGGTTTAAAACAAGTCGATTATTTGATGAAACCAAACACAGgggcaaaaacaaatatgaaaacacagaAGGAAAAATGTACTGTAGAGTCTGCTTTGACCAGCTTGTCAGCAGAGGAGAGTCATTTAAATGTGATGAAGTCCGTACTTTCGTAACATGCCCATTAAATCCACTGCAAACAtcaataaaatttacattttacagctcTGAAAAACAAGAAGTGAAGTTTACAGATGAGCCGATGGTAGAAGAGATTGGTTCTTTATTAGTTAACATGCCTAACACTGACAAAGGCAAACAACGAAAGGTCAGGTTGGAGATCAAATTTGGCTCCACTGAAATGCAGGCAACTGCTACTGATTTAGAATCAGGTGAAACAAGAACAACCAAACTGGACTTCATGAGCAAGCAgtaatttttattcaaattcataAATATGTGCCTGAATATTgtaaaaaccaacaacaacaaaatcctcATATTGgcacaataaattatataatcataatattcTGTAGTGTGCAAGCACAACCTTACAGGTTAagtattatttgattaaaatcaaaatatccAGTTAGGGCCTAGTCTCCCTAAATTCTTTTATATgtcaattaattaatataatataatataataattactgtATGAGCACAATAATGCcatattaacttattttaattactcTGATAATTCCTACAAATGTGGTGTACGACTATACCAGAATATTATCTAGTTGAACAAAGccaattaacaaaatataacatataacaatttttagcaatatttatgtttttgttttaagacattacaactaaaacaaagaaaataaataaaaaacaagcaaattaatttcagtttctctaaaaaaacaaacaaaaaaactagttATGTGTGTattaactaattttatttttttttattttctgcatgCAATATATGCCTTCAAAGAGTTTGAAAACAGTATGTATTGATTGTATTGATTATATACAATCTAAGGTAATGGGGTAAAAAAAAGGTGTGACAATTGACTTTTGCTTagattataaacatatttaaaacatatatgaaCATTATAAATTATGTGCATGCAAACTCAAGCTGAGTTAACGCTACATATTATTAGCTCTTTTTGTCAGCGACAGTGTTGTGATAATCAGATAAAATGGTACTCCTTCATGCATTATGTAAAAAGGGACAGCAACACCTGTATTGTTTAACAAAGTTAAAACTATTCAATATATAGTATACATCTTGTCTTACCTTATGAATAGAATAGTTACTCTTAATGAGAGGATCATAGGTTAACAACAAAGaagtttgtaatttttgttatttttaattacagtcCTTTCAGGTTCTGTGTGAGGTGACAAATGACACACACAAAGTTTGTTGATATTGTTGAAGGATGCttagttatgtttttatgtttattcattcatttgtaattatttataatcaCTTAACAATGGATTTTTTAtcgtttgattattttgatcatatattcatatgaagcatttttactgtttattcattcattgtgcttctatattttgtatttcttattaattttttcttgcttatgtattttcattgttGTTCAGTCTCTGCTTGTGTCAAAGCTTGTGGTGtttcatgaaatgttttgtCTGATAGATAAAGGGAAATTTATGGAAGGCCAAAGTTTATGGGATGTTGCTGTGAAGCTATAACtatgttatatatgttatatcGAATTTGTGCTTGTTAGACGAAGAGTGAACTAAGATTGTTCAATAAATTCTGTTACTATTTACTATCATCA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252729 lncRNA upstream 5255 2255712 ~ 2256070 (+) True G170673
TU252703 lncRNA upstream 25411 2235619 ~ 2235914 (+) True G170663
TU252702 lncRNA upstream 28970 2232147 ~ 2232355 (+) True G170662
TU252697 lncRNA upstream 40564 2220471 ~ 2220761 (+) True G170657
TU252670 lncRNA upstream 77698 2183403 ~ 2183627 (+) True G170639
TU252739 lncRNA downstream 25946 2297082 ~ 2507437 (+) True G170681
TU252737 lncRNA downstream 127956 2399092 ~ 2403258 (+) False G170681
XR_006248230.1 lncRNA downstream 225540 2496676 ~ 2498006 (+) True LOC122331608
XR_006248255.1 lncRNA downstream 277165 2548301 ~ 2553060 (+) True LOC122331626
TU252719 lncRNA downstream 548886 2820022 ~ 3020921 (+) True G170668
XM_043228926.1 mRNA upstream 83044 2173507 ~ 2178281 (+) True LOC122331483
XM_043228925.1 mRNA upstream 84863 2173493 ~ 2176462 (+) False LOC122331483
XM_043228920.1 mRNA upstream 116279 2142284 ~ 2145046 (+) True LOC122331475
XM_043229213.1 mRNA upstream 153336 2105853 ~ 2107989 (+) True LOC122331712
XM_043229212.1 mRNA upstream 157026 2095095 ~ 2104299 (+) True LOC122331711
XM_043229137.1 mRNA downstream 49997 2321133 ~ 2329824 (+) False LOC122331586
XM_043229138.1 mRNA downstream 50022 2321158 ~ 2329824 (+) False LOC122331586
XM_043229139.1 mRNA downstream 52685 2323821 ~ 2329824 (+) True LOC122331586
XM_043228922.1 mRNA downstream 114307 2385443 ~ 2397688 (+) True LOC122331480
XM_043228947.1 mRNA downstream 154005 2425141 ~ 3015269 (+) True LOC122331512
TU252659 other upstream 116812 2142280 ~ 2144513 (+) False LOC122331475
TU252423 other upstream 751268 1464065 ~ 1510057 (+) True G170438
TU252426 other upstream 775940 1481336 ~ 1485385 (+) True LOC122331738
TU252427 other upstream 775940 1482894 ~ 1485385 (+) False LOC122331738
TU252416 other upstream 908683 1351676 ~ 1352642 (+) True G170431
TU252772 other downstream 154021 2425157 ~ 2443584 (+) False LOC122331512
TU252742 other downstream 360241 2631377 ~ 2813039 (+) True G170683
XR_006248197.1 other downstream 581254 2852390 ~ 2897838 (+) False LOC122331570
XR_006248205.1 other downstream 581254 2852390 ~ 2897838 (+) False LOC122331570
XR_006248203.1 other downstream 581254 2852390 ~ 2897838 (+) False LOC122331570

Expression Profile