G171289


Basic Information

Item Value
gene id G171289
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 5170197 ~ 5170636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU253612
ATCTTCTCATCATCTCTACTTCTGCTGGCAGCAGCTGCATCCTGTGGTGTTTTCTGTGTTGAACTTGATCAGCCTTCATCTATGGTTGTGAAACCTCAAGAATCCTTCTCCATCTCCTGCAGGATTTCAGAATCTAGCTATTGCATTCACTGGATCCGTCAACCCACTGGAAAAGCACTGGAATGGCTCGGATATCTTTGTAGCAGTGGTAGCACTGGAACAGCAGACTCCGTAAAAAACAAGATCAGTTTCACCCAGGACACGTCCAAAAACACAGTGTTTCTACAGGGGAACAATTTTCAGACCGAGGACTCAGCTGTGTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253612 True 325 lncRNA 0.46 2 5170197 5170636

Neighbor

gene id symbol gene type direction distance location
LOC122331702 NA coding upstream 111022 5056236 ~ 5059175 (+)
LOC122331667 NA coding upstream 160681 5009042 ~ 5009516 (+)
LOC122331699 LOC107573535,LOC107571679,LOC107574960,LOC107710299 coding upstream 209126 4943597 ~ 4961071 (+)
LOC122331573 NA coding upstream 323608 4845145 ~ 4846589 (+)
LOC122331584 LOC107661924,LOC107571811,LOC107758410,LOC107571812 coding upstream 358273 4807851 ~ 4811924 (+)
G171281 NA non-coding upstream 13474 5156004 ~ 5156723 (+)
G171221 NA non-coding upstream 87353 5082571 ~ 5082844 (+)
LOC122331705 NA non-coding upstream 162107 5005627 ~ 5008090 (+)
G171208 NA non-coding upstream 178137 4987348 ~ 4992060 (+)
LOC122331696 NA non-coding upstream 284998 4882361 ~ 4885199 (+)
LOC122331671 NA other upstream 2092 5160473 ~ 5168105 (+)
G171269 mgat5b,LOC107562046,LOC107743022,LOC108274344 other upstream 15062 5145154 ~ 5155135 (+)
proza proza,LOC107573529,LOC107732003,LOC107576663,LOC107680190,LOC108438900 other upstream 981944 4182175 ~ 4188253 (+)
G170961 NA other upstream 1001167 4168634 ~ 4169030 (+)
G170953 NA other upstream 1065067 4104474 ~ 4105130 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026554 ighv7-1 coding NC_007114.7 CM002887.2 34076378 ~ 34076807 (-)