G189922 (LOC107696707,LOC107552674,LOC107596285,LOC107596284,LOC107660387,LOC107724973)


Basic Information

Item Value
gene id G189922
gene name LOC107696707,LOC107552674,LOC107596285,LOC107596284,LOC107660387,LOC107724973
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048437.1
NCBI id JAEQBD010000782.1
chromosome length 782096
location 189246 ~ 196593 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU281823
ttaaaggcgattttctcaatattataTTTCCTCCGATATTATCCCACCCTTAACAGCCCATTATTTATTAAGTTCACATATATATTACCAGCTATTGAACTTGCATGTCTTCTTTTATTTGTCCTCATTCAGACACAGTCTTAAAGTTTTGATTCATATTTTCAATCTTTGCCATTGAAAACGGTTTGTCAAATCTGATGATCGAATCCCGTTGCACGCTTTTGAAGGCATGTATATAAAAGCGATCTGTATGAAGAGGAAGACGATGAGGAAGACGATGAGAAACCCGACGCGCACCTCGATAGCAGAAAGCGTCGAAGCGCGCCGTCCCGTTGCTCAGCTCCTCCGGTGAAGCGGTCCGGACGCCGGGTTCTCCGCCGGGACAGTCGGAGCGCAGCGGGCCGATGGAGGACCTCGCGCTGCCGTCGGAGACCCAGGCCGGCTCACAGTGATCCAGCCGGCAGCGCAGCTGTTCAGACCCGAGTGAAACGCTGCCCACAGCTGCTCAGGGGTCGCGACCTCTGCCGAGTGCTCCTGGCACGCTTGAGCGGCCTCGGAGAACGACAACGAGTAACGCTCCGCCGGAGAGCCGTAGTGAAACACCctgacctttgacctccagGTTGACCGTGTCCTGCTCATATTTCTCCCCGAGAGCGACGTGGCAGCGGAAGACCCCGGAGTCGTTGGAGCGGAGCTGGGAGATCTCCAGCGAGGCGTCGAGCGGGTCGGCGGAGTATCCGGGCAGACTGACCCGGCCCGCGTACGCCCGGTGCACCCGGACCACCCCGTCCCGGGCCGACAGCACCGTCCGCTCGCCCCGGCTCCAGCGGATGAAGGGCCCGTGTCCCGGGGGCCGGGCGGCTGGGAGCGTGAACACACACGGGAGCAGAGCGGAGCCCGATAACGGCCGGAGAAGAGGAGGATGGGTCACCCTCCGGACCGTCGCCCGAGTCTCAGCCCGAGTCAGTC
>TU281824
CATAATCACCTGCTCCGGGCGCTGTGGTGGTTCTGGCGGGCGTCTCGGGCGTCTCGGGCGTCTCGGTCACAGCCGAGCTCTTAGTCGTCGTCTCCGCTTCGCTTCCGCTCAAGTAGCTCCAGGGCTTCCACAGCGAGCTGACGATGTTGGTGAGGGAGCTCTTGCTCTTTCCTTGAGGAGCCTCCGAAGGAGTCGCGGCACTCATGGACTGACCGGACAGACCTtcgtcctcgtcctcctcctcccgGGCCGAGCCGCCAGGACTCAGATCCGGGGACGCCTGCCGGACGTCTGGGAAGGAGTCCAGCTGACCGCTCCAGTCCAGAGACGTGTCCCCGGCTCACAGTGATCCAGACCAGAGCTCCAGGCCAGGTACAGCTGACCCACGGTCGCCAGCCGGCCgcccacagacacacagagagccTCGGCCTCCGGGCGGCTCAGTCGGTCAGGAACACCGGCCGGGAACACTTCACCT

Function

NR:

description
PREDICTED: neurocan core protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281823 True 972 lncRNA 0.59 3 189246 194611
TU281824 False 478 lncRNA 0.66 2 194031 196593

Neighbor

gene id symbol gene type direction distance location
eef2b eef2b,LOC107552698,LOC107696714,LOC107724979,LOC108427162 coding downstream 115909 63597 ~ 73337 (-)
tm6sf2a LOC107696370,LOC107748525,LOC107596302,LOC107660391 coding upstream 31459 228052 ~ 240327 (-)
polr2ea polr2ea,polr2e,LOC107660381,LOC107596300,LOC107669821 coding upstream 101658 298251 ~ 301108 (-)
rab11bb rab11bb,LOC107660390,LOC108427173,LOC105903927,LOC107552705,LOC108280567,LOC105900968 coding upstream 156037 352630 ~ 360520 (-)
LOC122335615 homer3,LOC107696283,LOC108427175,LOC107660377,LOC108280570 coding upstream 204828 401421 ~ 430858 (-)
upf1 upf1,LOC107724030,LOC107696277 coding upstream 236503 433096 ~ 452801 (-)
G189897 NA non-coding downstream 53233 108283 ~ 136013 (-)
G189896 slc25a42,LOC107552673,LOC107696381,LOC107671810,LOC107384089 non-coding downstream 84005 34028 ~ 105241 (-)
G189968 NA non-coding upstream 137148 333741 ~ 334195 (-)
G189972 NA non-coding upstream 146776 343369 ~ 345731 (-)
G189964 NA non-coding upstream 151053 347646 ~ 349845 (-)
G189981 cers4b,LOC107552707,LOC107723220,LOC107696307,LOC107596256,LOC107660386,LOC107724109 non-coding upstream 187414 384007 ~ 385713 (-)
G189970 NA non-coding upstream 195949 392542 ~ 393460 (-)
G189894 NA other downstream 163529 21472 ~ 25717 (-)
G189952 NA other upstream 106336 302929 ~ 306500 (-)
nmrk2 nmrk2,LOC107696854,LOC107552712,LOC107750947,LOC107723974,LOC107687917,LOC107596250 other upstream 321540 518133 ~ 521201 (-)
atcayb atcayb,LOC107552711,LOC107696247,LOC107687916,LOC107750922,LOC107596247 other upstream 326775 523368 ~ 541804 (-)

Expression


Co-expression Network