G189981 (cers4b,LOC107552707,LOC107723220,LOC107696307,LOC107596256,LOC107660386,LOC107724109)


Basic Information

Item Value
gene id G189981
gene name cers4b,LOC107552707,LOC107723220,LOC107696307,LOC107596256,LOC107660386,LOC107724109
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048437.1
NCBI id JAEQBD010000782.1
chromosome length 782096
location 384007 ~ 385713 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU281913
ttatatgtttatttcacTAAATCTAACTGTTGCAGTAAAATGACCAAAGATGCAGCAGAAAACATCAGGTTCGTCAGTCTTCATCACCGGCCATAATTCTGATCTTGAAATCGTGATTATGCATGAAACAATATCATGCACGTGACATTGCGCCCGAGAACTGATCAGACAGGTGTAAAAAGCGACTGAGTTTCAGACACATGCGCTATTTTTGTAATCTGCGGCACAAAATGACCAGAAAGCTGTACTGTATTTCTCTCAGCAGGGTCACGTGATCAGTTCTCTGAGGACATATGACTGCGAGGTCACCAAAAGCAACTTACCTGGCCTCGCAAAACTTCTTACTGTTGCTGGGTCGGTCCAGGTTTCTTCGGTTACGAAACCAGGTCTCCACTTGTCTGTGAGTCAGGTTGCACTGGTTAACCAGGCCGGTGATCTCGCTCTAGGTCGGCTGTCTGCTGTTTTTAGTGTAAAATGCCTCTAAATTTGGGACAGGAGCGACTTTCAACCGAACTTGATCTTTCACTCCTAAAACTCTGctgagaggaaagagagagagagagagagagacagagagacagagagaa

Function

symbol description
cers4b Predicted to enable DNA binding activity and transferase activity. Predicted to be involved in sphingolipid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Is expressed in brain; digestive system; myotome; and pectoral fin. Orthologous to human CERS4 (ceramide synthase 4).

NR:

description
PREDICTED: ceramide synthase 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281913 True 587 lncRNA 0.45 2 384007 385713

Neighbor

gene id symbol gene type direction distance location
rab11bb rab11bb,LOC107660390,LOC108427173,LOC105903927,LOC107552705,LOC108280567,LOC105900968 coding downstream 23487 352630 ~ 360520 (-)
polr2ea polr2ea,polr2e,LOC107660381,LOC107596300,LOC107669821 coding downstream 82899 298251 ~ 301108 (-)
tm6sf2a LOC107696370,LOC107748525,LOC107596302,LOC107660391 coding downstream 143680 228052 ~ 240327 (-)
eef2b eef2b,LOC107552698,LOC107696714,LOC107724979,LOC108427162 coding downstream 310670 63597 ~ 73337 (-)
LOC122335615 homer3,LOC107696283,LOC108427175,LOC107660377,LOC108280570 coding upstream 15708 401421 ~ 430858 (-)
upf1 upf1,LOC107724030,LOC107696277 coding upstream 47383 433096 ~ 452801 (-)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding upstream 69084 454797 ~ 462684 (-)
loxl5b LOC107740551,LOC107696862,LOC107596248,LOC107687932,LOC107578202 coding upstream 115597 501310 ~ 507603 (-)
klf2b klf2b,LOC107696218,LOC107687931,LOC107750946,LOC107596297,LOC107754610,LOC107552717 coding upstream 236969 622682 ~ 626173 (-)
G189964 NA non-coding downstream 34162 347646 ~ 349845 (-)
G189972 NA non-coding downstream 38276 343369 ~ 345731 (-)
G189968 NA non-coding downstream 49812 333741 ~ 334195 (-)
G189922 LOC107696707,LOC107552674,LOC107596285,LOC107596284,LOC107660387,LOC107724973 non-coding downstream 187414 189246 ~ 196593 (-)
G189897 NA non-coding downstream 247994 108283 ~ 136013 (-)
G189970 NA non-coding upstream 6829 392542 ~ 393460 (-)
G189960 NA non-coding upstream 11145 396858 ~ 399129 (-)
G189988 jund,LOC107740545,LOC107696268 non-coding upstream 74968 460681 ~ 490100 (-)
G190014 NA non-coding upstream 209040 594753 ~ 596341 (-)
G190022 NA non-coding upstream 227940 613653 ~ 617400 (-)
G189952 NA other downstream 77507 302929 ~ 306500 (-)
G189894 NA other downstream 358290 21472 ~ 25717 (-)
nmrk2 nmrk2,LOC107696854,LOC107552712,LOC107750947,LOC107723974,LOC107687917,LOC107596250 other upstream 132420 518133 ~ 521201 (-)
atcayb atcayb,LOC107552711,LOC107696247,LOC107687916,LOC107750922,LOC107596247 other upstream 137655 523368 ~ 541804 (-)

Expression


Co-expression Network