Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000004_04798717_04889650 |
| gene name | ARHGEF4 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 4798717 ~ 4889650 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| arhgef4 | Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ARHGEF4 (Rho guanine nucleotide exchange factor 4). |
| id | description |
|---|---|
| K05769 | ARHGEF4_29, ASEF1_2; Rho guanine nucleotide exchange factor 4/29 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000004_04798717_04889650.mRNA | True | 8169 | mRNA | 0.46 | 15 | 4798717 | 4889650 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_04786239_04788953 | NA | coding | upstream | 9756 | 4786239 ~ 4788961 (+) |
| CI01000004_04754556_04784656 | ATR | coding | upstream | 13960 | 4754556 ~ 4784757 (+) |
| CI01000004_04690908_04706755 | ATP1B3A | coding | upstream | 91817 | 4690908 ~ 4706900 (+) |
| CI01000004_04535801_04536013 | NA | coding | upstream | 262208 | 4535258 ~ 4536509 (+) |
| CI01000004_04498877_04532504 | CLCN2, CLCN2A | coding | upstream | 265631 | 4498877 ~ 4533086 (+) |
| CI01000004_04924543_04956339 | VAV3B | coding | downstream | 34858 | 4924508 ~ 4956435 (+) |
| CI01000004_05154049_05203177 | COL11A1B, COL11A1 | coding | downstream | 264399 | 5154049 ~ 5203177 (+) |
| CI01000004_05227614_05231253 | OLFM3, OLFM3A, OLFM3B | coding | downstream | 337964 | 5227614 ~ 5232052 (+) |
| CI01000004_05238552_05246750 | TECRL2B | coding | downstream | 347554 | 5237204 ~ 5247114 (+) |
| CI01000004_05343381_05353920 | NA | coding | downstream | 453731 | 5343381 ~ 5354231 (+) |
| G27305 | NA | non-coding | upstream | 42490 | 4755730 ~ 4756227 (+) |
| G27278 | NA | non-coding | upstream | 75087 | 4723420 ~ 4723630 (+) |
| G27271 | NA | non-coding | upstream | 102800 | 4694973 ~ 4695917 (+) |
| G27265 | NA | non-coding | upstream | 111795 | 4686708 ~ 4686922 (+) |
| G27183 | NA | non-coding | upstream | 137580 | 4659347 ~ 4661137 (+) |
| G27295 | NA | non-coding | downstream | 5902 | 4895552 ~ 4900837 (+) |
| G27293 | NA | non-coding | downstream | 15509 | 4905159 ~ 4993021 (+) |
| G27148 | NA | non-coding | downstream | 101753 | 4991403 ~ 5116579 (+) |
| G27383 | NA | non-coding | downstream | 218612 | 5108262 ~ 5126498 (+) |
| G27388 | NA | non-coding | downstream | 243555 | 5133205 ~ 5133577 (+) |
| CI01000004_03550525_03552621 | PTGER4C | other | upstream | 1246271 | 3550329 ~ 3553423 (+) |
| G26245 | NA | other | upstream | 1276324 | 3509017 ~ 3522393 (+) |
| CI01000004_02745885_02768971 | NA | other | upstream | 2039779 | 2745885 ~ 2769135 (+) |
| G25992 | NA | other | upstream | 2061949 | 2736536 ~ 2736768 (+) |
| G25882 | NA | other | upstream | 2225668 | 2548075 ~ 2573049 (+) |
| G27805 | NA | other | downstream | 483175 | 5372825 ~ 5373803 (+) |
| G28165 | NA | other | downstream | 842939 | 5732589 ~ 5733001 (+) |
| G28302 | NA | other | downstream | 1580378 | 6470028 ~ 6502087 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | downstream | 1681570 | 6570771 ~ 6572667 (+) |
| CI01000004_07654234_07655677 | MRPL34 | other | downstream | 2765122 | 7654234 ~ 7656383 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00009126 | arhgef4,LOC108432112,LOC107700563 | coding | CM030126.1 | CM030126.1 | 26655165 ~ 26673239 (-) |
