CI01000004_11215878_11229028 (LIPIN2, LPIN2)


Basic Information

Item Value
gene id CI01000004_11215878_11229028
gene name LIPIN2, LPIN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11215682 ~ 11229122 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_11215878_11229028.mRNA
TTTTAAAAAGGCAGGTGGCCAAAGAGAACTTTCACTTTTAACATGAGTTAAGGAGTGATTATGCCACATTTGCCATGTACAAATACAGAATTGGAAAAGACTTACAAAAAGAAAGAGTAGTTCTTGTTTGCAGCGTTTGTTGATGTCTTGTGGTTAAATTTATTTTACTTTCTGTTCCTCAATTTAGGCAGGCACCATGAATTACGTGGGACAGTTGGCAGGTCAGGTGCTGGTGACCATGAAGGAGCTGTATAAGGGCATTAACCAGGCCACGCTCTCAGGCTGCATCGATGTAGTGGTGGTCCGCCAGAAGGACGGCACCTACCAGTGCTCTCCTTTCCATGTGCGCTTCGGCAAACTGGGTGTGCTGCGCTCCAAAGAGAAAGTGATTGACATAGAGATCAACGGGGAGCCTGTGGATCTCCACATGAAGCTGGGAGATAATGGAGAAGCCTTCTTTGTGCAGGAAACTGAGGAGCAGAACGAGATTGTACCAGCTCACCTGGCTACCTCCCCCATCCCCACTGAGAGTCACCTGTTTTGGATCGGAGGTGATCACAGGCCAAGTCAGAACCTGGATGATGATCCACTAGACCCTGAGGACCCTCCTGATCCCCCTGTTGCCAGCACAGGGGCAGCCAAGAAGAAGAAGAAACGGAGGAAGAAGCATAAAGGCGATCCACGGCGAGAGGAGCTGACCCCTCCTGCCGTCATCAGCTCTACCCCTTCAACAGAAGACATATTTGAAATGGACCTTAGTTCTGACGAGGACGCTGCTTCCAACACCAGATCATCTTCAATCAGTATAGTTCGAGAAATTGAACCCAGGTTACCAACAGTTCGCCATTCTTTAGACAACTACCCTTACTCTGACGGAGACTGGTCTCCATCAAATAGCAGTCATGCCATGTCAGAGGCCTTTTCTCCCAAGAGTGACTCCGAACTGGTCGTTCGGCCCTCAGAGAGCCTGCTCAAAATGGAGTCGCACATGCAGTGGACATGGGGAGAGTTTCCAGAATCTACTAGGGTTTCAAAGAAGGAGAAGATGGAGCTGCCGAAGACCGTGACCATAACGCCTTCAGAGAACACTCACTTCAGAGTCATCCTCAGCTCAGAGGCCATGGAGACGGATGAAAGAGAACGGGCCATAGGGACTCCCGGCTGTACCATAGTCAAGCCTGAACCCCGAACCCCTGTGACCCCCAAAACTCCCACTGATTCGGAGTTGGAGATGGTACCTAGTGGAGTGTTGACATCCACTCCTTCATCCAGCCTCCCTGCTGCTCCCACTGCTCCAGCTGCTGCCTCTGCTACTCATATAGGTGGAGACATGGGAGATGTTGGCTCCAAGACTGACTCACCCTCCAAGAAGAAAGGCGTCCCAAAAAGAAGTCAGCACCAAGGCCCAGAGGACATCTACCTGGATGACCTGAATGTTCTGGAGCCTGATGTTGCTGCTCGCTACTTTCCTAAGAGTGAATCAGACTCCGGCTCCAAGCACTGGATGGATTCTGGGATGCGCTCAGGCTCTCAGTCCCCACAGTCTGTGGGCAGTGCTGCAGCTGACAGTGGCACCGAGTGTCTGTCTGACTCTGCCAGTGATCTGCCTGACGTCACTCTGTCTCTGTGTGGAGGACTCGAAAAATTCATGGAGCACATCATCACGTACCATGAATTTGCAGAGAGTCCAGCTATCATAGACAATCCGAATTTAGTTGTTAAAATAGGAAACAGGTATTACAATTGGACATTGGCTGCCCCTTTGATCTTAAGTTTGCAAGCATTTCAGAAGAATTTACCCAAGGCTACAGAGGAAGCTTGGGTGAAAGAGAGGATGCCAAAGAAATCAGGCCGCTGGTGGTTCTGGAGAAAGAGAGCAGACAGCACTATTAAACAGTCAGAAAGCACTGGAAAGCTGGAAGTAAAGCAGTCCCAAATGGAGGATGGCAGCTCATCTTTGTCAATGGAAAGTCATGCCCGCAAAGTGGACACCAGGGACTCGTCCAGCGATGAGGAGGGGAAGGAGGTGAGTGCTGCCGCATCGTCAATGGAGCGCAAGGTCCAGTCTGAACCCCACGGCCACACGTCCACTCACTCCTACCGCAAGTCCCTGCGCCTCTCCTCCGACCAAATTGCTAGTTTGAAACTGAAGGAAGGACCCAACGATGTGATGTTCAGCATCACAACACAGTACCAGGGCACATGCCGCTGTGAAGGCACCATCTACCTTTGGAACTGGGATGACAAAGTTATCATCTCAGACATTGATGGAACCATCACCAAATCAGATGTGTTCGGGCAGATTTTGCCTCAGTTTGGGAAGGACTGGACGCACCAGGGCATTGCTAAACTCTACCACTCCGTGGCTGAGAATGGATATAAATTTCTGTACTGCTCAGCGAGGGCAATTGGTATGGCAGACATGACACGAGGGTATCTGCAGTGGGTGAACGATGGAGGCATTATCCTGCCCCGTGGACCCCTCATGCTCTCTCCTAGTAGTCTCTTCTCTGCATTTCACAGGGAGGTGATTGAGAAGAAGCCAGAAATCTTCAAAATTGAATGCCTTACTGACATCAAGAACCTTTTCCTGCTCAACAAACATCCCTTTTATGCTGCATTTGGAAACCGAACAAACGACGTCTTTGCCTATAAGGAGGTTGGAGTGCCACTCTGCAGAATCTTTACTGTTAACCCCAAAGGAGAGCTCATACAGGAGCAAACCAAGGGCAACAAGTCCTCGTACAGTAGATTGAGCGAGCTGGTGGATCACGTCTTTCCCTTGCTGAGTAAAGAACAAAGTTCGGCTTTCAATTTCCCAGAGTTCAGCACCTTCTGTTTCTGGCGTCAGCCTATCCCTGAGATCCGTCCGGAAGACCTAAATTTATAGACCATGCCTGAAGGCCCATCTATTACGCGGTCATGGTCATCCCTGCCATTGGAACCATTAAATGGTACCCTGAAACATCTCTAGTTAAAGACAA

Function

symbol description
lpin2 Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; fatty acid catabolic process; and triglyceride biosynthetic process. Predicted to be active in cytosol; endoplasmic reticulum membrane; and nucleus. Orthologous to human LPIN2 (lipin 2).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_11215878_11229028.mRNA True 2984 mRNA 0.50 19 11215682 11229122

Neighbor

gene id symbol gene type direction distance location
CI01000004_11181665_11204466 MYOM1A coding upstream 9606 11181665 ~ 11206343 (+)
CI01000004_11168348_11170417 BAG1 coding upstream 44908 11168348 ~ 11170774 (+)
CI01000004_11163514_11166543 NA coding upstream 49139 11162918 ~ 11166543 (+)
CI01000004_11155692_11159471 OPRK1 coding upstream 55182 11154644 ~ 11160500 (+)
CI01000004_11091985_11100992 ATP6V1H coding upstream 113865 11091680 ~ 11101817 (+)
CI01000004_11432849_11451784 MGC115231, YES1.L, YES1 coding downstream 203727 11432849 ~ 11452991 (+)
CI01000004_11489380_11502517 COLEC12 coding downstream 260258 11489380 ~ 11502868 (+)
CI01000004_11505808_11516796 STAM coding downstream 276686 11505808 ~ 11518182 (+)
CI01000004_11520078_11522835 NA coding downstream 290805 11519927 ~ 11523093 (+)
CI01000004_11547197_11557429 CACNB2B coding downstream 318075 11547197 ~ 11560552 (+)
G31338 NA non-coding upstream 40458 11172182 ~ 11175224 (+)
G31362 NA non-coding upstream 84737 11129485 ~ 11130945 (+)
G31353 NA non-coding upstream 153759 11061711 ~ 11061923 (+)
G31349 NA non-coding upstream 159619 11055743 ~ 11056063 (+)
G31425 NA non-coding downstream 64778 11293900 ~ 11294132 (+)
G31426 NA non-coding downstream 65237 11294359 ~ 11294617 (+)
G31575 NA non-coding downstream 97996 11327118 ~ 11327423 (+)
G31662 NA non-coding downstream 176042 11405164 ~ 11405756 (+)
G31663 NA non-coding downstream 176797 11405919 ~ 11406265 (+)
G30797 NA other upstream 717894 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2234698 8976254 ~ 8980984 (+)
G28859 NA other upstream 2616079 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 2764455 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 3559299 7654234 ~ 7656383 (+)
G31710 NA other downstream 408129 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 435651 11666900 ~ 11667659 (+)
G31865 NA other downstream 963008 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 1413632 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2794425 14035393 ~ 14039142 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location