CI01000004_14283392_14361256 (LAMC1)


Basic Information

Item Value
gene id CI01000004_14283392_14361256
gene name LAMC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14282136 ~ 14363133 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14283392_14361256.mRNA
GTATATATAACCTCGCTCTTTGACTTCTGCTCTCAGCAGCAACAGCTATCATCCTCTAGTTATTCATAGCACGTGGGATTCATCCAGAAAGTATGTCTCTGAAGATACCACAAGATAAATGTGAATGTAAAGATCTCAGAAAAAAAGTTTTTTTAATGGATAGAAGTTTAATTAGGCCTACTTATATTCCTGTCCGCATATGGACAGCTTATCTAAAGGATTTTTTTCTGGGATTAAACACATATGTGACCCTGGACCACAAAACCAGTCATAAGTCGCACGGGTATATTTGTAGCAATAGCCAACAATACATAGTATGGGTCAAAATTATCGATTTTTCTTTTATGCCAAAAATCATTAGGATATTAAGTAAAGATCATGTTCCATGAAGATATTTTGTAGATTTCCTACCATAAATATATCAAAAATGTATTTTTGTGAATGGATATGCTTTGCTAAGAACTTAATTTGGACAACTTTAAAAGGCGATTTTCTCAGTATTTTGATTTTTTTGCACCCTCAGATTCCAGATTTTCAAATAGTTGTATCTCGCCAAATATTGTCCTTTCCTAACAAACCATACATCAATGAAAAGCTTATTTATTCAGCTTTCAGATGATGTATAAATCTCAGTTTTTAAAAAAAAAATTTGACTGGTTTTGTGGTCCAGGGTCACATATTTGTTTAAATATTTAAGAGTAGGTAGTGATTAGTTCATCGCTCCGTTGAGAATCTGTGAGGTATGAAATTCAGTCCCCGCCCACTCCTGGACTTGACTGGGAAACTGACCAATTAGAAAAGTGCAAAACCACGCCCATACCGCTTTCGCCACGCCCACGCATGTCTCCCTGTCCATTCGGACTTGCCTTGTTTAGCGGGCCGGCGGTCCATCAAAGCATCCTTCAGGCGGAAGTAGACGTAGGGATTTTTTTTTGGAAGTACTTTGACTTGCGCACTAGCTGCCAGGGTGTAGTCGGATATAGTCCCTTTTCTCCAAAACTTTTTTTCTCCATGGCGGTGGTTACAAAGCACCAATAAAGTGAAGGTCTGCAAGAGAGAAGTCGCGAGGAGATTAAGCCACAACTGTCGCTTTTTTGGAGGTGAAGCGGTTACCACCATTTTCCGCATGAGTTTATTTATTAAACCACAAACTCGGTAGCTGGCGAGTTACCGCAAACTTTTTAAAGACTGCGAGGATTTAAGGGATCAAGACAGTGACTGTAAGCTACGTGAGCTCGCATAAACTAAAGGACACAATGTCGGTTTTTAGCTGTTTGTTATTATGGACTTTGTGGGCAGCGTGTAGTCATGGAGCGATGGATGAATGTACAGACGAGTTCAATCGGCCTCAGCGCTGCATGCCAGAGTTTGTTAACGCCGCTTTCAATGTAACCGTGGTGGCCACCAACACTTGCGGCTCGCCGCCTGAAGAATACTGTGTGCAGACCGGGGTTACGGGAGTCACAAAATCATGCCACATTTGCGATGCCTCGGACCCCAGACAGCACCACAGCGCTGTTTATCTCACCGATTACAACAACCAAGCGGATACCACCTGGTGGCAAAGTCAGACTATGTTAGCGGGCATCCAGTACCCGAACACAATCAACCTGACCCTTCACCTGGCCAAATTGGCCATCTTGGATCTTTTTAGTGTGACATGCTCAATGATAATTGCCTTTACAATGAGTCTCAGCCTCCGGAGACTGAAACTCTACACTGAAGTCCTCTTGTTAGTGTCACACGTGAAGGCATTTACCACAGCTGCTCTCGATAAGTTCCATTCACCAGACGCACGTCTGACGCATATGACCTTGAGCTTTAATATGTTCCCACTGTCTTTTTCAATCTCTCTTTCGGTCTGCCTGACCCCCCACACTGGCGTCACTATGTGCGGAAGCACATTCCAGTCAGTTCAGCAAGCTCTCGCCCTCCTCCCACCTCAACAACTCCTGTCACAAGTTGTCACAAAGTCTCAGTTTTGGTCAAAGCCTCACAATGGGGAGCCCCACAGTTTTTATCATCAATACCCTGATTGTTCTGGAAGAAGTGGTGGAGTTCCTCTTGTTCTTCTGCTCAGGGCAGTCTTGAACTTGAAGGGCTGGCCAGCTTCTGGCTTGATTCTTCATGGCTTTGCCAACAGATTTGGTTCGTCTTGTTTTGCGAGGATGCCGGGGAGACTTCAGAGAGATGTGTGTATGTTTGACACCTGCGTTGCTGATTTAGTGTCTTATCCAGTCCTTGAATCCAGCTCTATCTTTAGTGGGCCGTACTCAAGCACAGATTGTTTAGTAAAGAGAGCGTATGGCAAGGCTTTCGACATCACCTATGTGCGTCTGAAGTTCCACACCAGCCGTCCTGAGAGCTTTGCCATCTACAAGCGCACCAGTGAGGACGGGCCCTGGATTCCCTACCAGTACTACAGCGGCTCCTGCGAGAAGACCTACAGCAAGATCAACCGCGGCTTTATCCGCACGAGCGAGGACGAGCAGCAGGCTCTGTGCACAGATGAGTTTAGCGACATCTCACCCCTCACCGGAGGAAACGTGGCCTTCTCCACGCTCGAGGGCCGACCCAGCGCATATAACTTCGACAACAGCCCTGTACTGCAGGGAAAACGGCCTGCACGCCGAGCCAAAACAAGATGCTGCCCTGGTTACGGGGAGGATTGGGTGACTGCCACAGACATCAGAGTGACCCTGAACAGATTAAACACTTTCGGAGATGAAGTTTTCAATGATCCCAAAGTTCTCAAATCCTACTACTACGCCATCTCAGACTTTGCTGTGGGAGGAAGGTGCAAGTGTAATGGCCATGCCAGCGAGTGTGTGAAGAACGAGCGCAGCGAGCTGGTTTGTAACTGCAAACACAACACAGAGGGAGCAGACTGCAATAGGTGCAAGCCCTTCTACAATGACCGTCCCTGGAGAAGAGCCACTGCTGAAAACCCCAACGAGTGTCTGCCATGTAACTGTAACAGAAAGAGCGCAGAATGTTACTTCGACCCCGAGCTGTATCGTGCCACTGGACACGGAGGTCACTGTCGCAACTGTGCCGACAATACAGATGGGCCGAACTGTGAGCGATGCTTGGACAACTACTACAGAGTTCCTTCCGGCCAGCGCTGTCTTTCCTGCAGCTGCAACCCTGTTGGTTCTCTCAGTACTCAGTGTGACAACACTGGCAGGTGTAGCTGTAAGCCGGGAGTGATGGGAGATAAGTGTGACAGATGCCAGCCTGGATACCACACGCTGACGGAGGCAGGCTGCAGACCCTGCTCTTGTAATCCGGCTGGAAGCACGCAGGAGTGTGATGTCCAGACTGGACGCTGCCAGTGCAAGGAAAATGTGGATGGATTCAACTGTGACAGGGGTTCCAGACTCAGTCAAAGCCGTTCAGTGCTCTTGGTTTCTAATGAGAGCTTGTTTGTCATCCTTATCTGTTCTCTTGCTGTGTTCATACACCGGTGTAAACTGGGCTACTTCAACCTGGACCCCCAGAATCCTCAGGGATGTACTCCATGCTTCTGCTTCCAGCATTCCACTGTGTGTGACAGCGCTGATGGCTACAGCGTGCACAAAATCACCTCCGTCTTTGACAGGGATGATGAGGGCTGGAAAGGACAGCAGAGAGACGGCTCCAGTGTTCCTGTGCAGTGGTCACCCACCTCTCGAGAGATCTCGCTTATCTCAGAAGACTACTTCCCCATCTACTTTGTGGCTCCAGAGAAATTTCTTGGTAATCAACTGCTGAGCTATGGTCAGAACCTCACGCTGAACTTCAGGATTCAGAGACATGACGCTCGACTGTCAGCAGAGGATGTTGTGCTGGAGGGGGCGGGGCTTCGTGTTGGTGTGCCGCTTATTGCCCAGGGCAATTCCTACCCAGGAGAGGAGACACAAACCTTTGTGTTCAGACTCCATGACACCACGGACTACCCTTGGAGACCCCCAATGAAACATGCCGACTTCCAGAAACTCCTGCACAATCTGACTTCTGTTATGATTCGTGGAACCTACAGTGCAAGAAGTGCTGGTTATTTAGACAACGTGTCCCTTGTGACCGCCCGCCGTGGCACTGGAACTCCAGCTCGTTGGGTTGAGAAGTGTACGTGTCCTCAGGGTTACGTGGGACAGCATTGTGAGAAGTGTGATCTGGGATACAGGAGGAGCCGACCTGAGCTGGGCCGCTTTAGCTCTTGCGAGCCGTGCAACTGCAACGGACACAGTGACACCTGTGACCCTGTGACAGGAATGTGTAACTGCCAGCACAACACCGCCGGCATGAGCTGTGAGAGGTGTAAGGATGGGTTCTATGGTGACTCCACGGTTGGCTCTTCTTCAGACTGTAAACCCTGTCCCTGCCCAGCAGGTGCCACGTGTGCTGTGGTGCCCAAGACCAAAGAGGTGGTCTGTACAAACTGCCCAACTGGAACCACAGGTAAGCGATGTGAACTATGTGACGACGGCTTCTTCGGGGACCCTCTTGGTGAGAAAGGTCCAGTCAGGGCATGCCGGGCCTGCAGTTGCAATAACAACATCGACCCCAACGCTGTGGGCAACTGTAACCGAGAGTCGGGCGAATGCCTCAAGTGCATCTACAACACCGCCGGCGTCTTTTGCGACCGTTGCAAAGAAGGTTTCTACGGCGATGCCCGTGCCACAAACGTAGCTGACAAATGCAAACCGTGCTCGTGTTCTCCGTACGGTACAGTAGACGGGCAGACAACCTGCTCTCAGGTGACGGGCCAGTGTCAGTGTCTTCCACACGTCATTAACAGAGACTGCGGTGCGTGCGAGCCCGGATTCTACAACCTAAGGAGCGGCAAAGGCTGTGAAAGATGTAACTGCAACCCTATTGGCTCCACAAACGGCCAGTGTGATATCGTTACCGGCCAATGCGAGTGTCAGCCTGGGGTCACAGGTCAACACTGTGAGCGCTGTGAGGTCAACTTCTTTGGATTCAGTTCATCGGGTTGCAAACCTTGTGACTGTGACCCAGAAGGCTCTCAGTCCGCACAGTGCAAAGAAGACGGCCGTTGCCAGTGTCACCAAGGCTTTGTGGGAGCTCGCTGCGACATGTGTGAGGAAAACTACTTCTACAACCGCTCCGTTCCAGTCTGCCAGCAGTGTCCCAACTGTTACAGCCTGGTCAGAGACAAGGTGAACCAGCAGAGACAGAAGCTTCTTGACCTACAGAATTTGATTGATGGTCTGGACAACAGTGAGAATACAGTGAGTGACAAGGCCTTTGAGGACAGACTTAAGGAGGCAGAGAAAACAATAATGGACTTACTGGAAGAGGCTCAGGCTAGCAAAGAAGTGGATAAAGGCCTTTTGGACCGTCTAAACAACATCAACAAGACCCTGAACAACCAGTGGAACAGACTGCAGAACATCAAGAACACAGTGGACAACACGGGAACGCAGGCGGATAGAGCACGTAACCGAGTCCGTGATGCAGAGGACCTGATCAACACTGCTAGAGAGGAGCTGGACAAAGCAAAGGAGGCCATCAGTAAAGTGGACATTAAAATCCCCACAACCTCTGGAGATCCAAATAATATGACACTTCTGGCAGAGGAAGCCCGTAAACTGTCAGAAAAACATAAAGCAGATGCCGATCAGATTGAAAAGATTGCGAAGGACGCCAATGACACTTCCACAAAGGCTTATAATATGCTAAAGAAGGCTCTTGATGGTGAAAACAAGACAAGCAGCGACATTGATGAACTCAACAGGAAATATATTGAAGCAAAAGATCTGGCCAAGACCCTGGAGAAACAAGCTGCTAAAGTACACGCTGAAGCAGAAGAGGCAGGAAACAAAGCTCTGAAGATCTATGCTAACCTGACCAGCTTGCCTCCAGTCGACACCAAAGCTTTAGAGGATGAGGCCAATAAGATCAAGAAGGAGGCATCAGACCTGGACAAACTGATAGACAAGACCGAGAAGGAGTACAACGACCTGAGAGAGGACCTGAGGAGCAAAGAGGCAGATGTCCGCAAACTACTGGAGAAAGGAAAGACCGAGCAACAGACGGCCGATCAGTTGTTGGCACGTGCAGACGCAGCGAAAGCTTTGGCTGAGGAGGCAGCAAAAAAAGGCAAATCTACCTTCCAAGAGGCCAAAGACATATTGAACAACCTCAGAGACTTTGACAAGAGAGTGAATGACAACAAAACCGCTGCTGAGGATGCCATGAGGCGAATCCCAGAAATCAATGCGACAATTAATGAAGCCAATGAGAAGACCCGAAGAGCAGAGGCAGCTTTAGGCAACGCAGCTGCAGATGCTAAAGAAGCCAAGACAAAGGCAGAGGAAGCCGAGAAAATCGCTAATGACGTACAGAAGGGTTCGGCGAAGACTAAGGCAGATGCAGAAAAAGCTTTTGAGGACACCATGAGACTGGATGGAGAGGTGAACGATATGATGGACCAGCTCACAGCTGCTGAGAGAGAGCTAGAGAAGAAGAAAGCAGAGGCGGTCGTTGACATGATGATGGCAACCATGGCATCTGATAATGCTAAAGAAGCTGAGGGCAATGCCAGAAAAGCCAAAAATGCTGTCAAGACAGTGCTGAACACAATCAATGAATTATTAAGCCAGCTCGGCAACATCGATAAGGTGGATCTGAGCAAGCTGAATCAGATTGATAACGCTCTAAAAGAAGCCAAGGACAAGATGGCAGGAAGTGAGCTGGACAGGAAGCTGAAGGAGTTGAATGACATCGCCAAGAGCCAGGAGGACATGATCGACGACTACGACCGCCAGATCCAAGAGATTCGAGCGGACATCGTTAACCTCAACGACATCAAGAACACTCTGCCAGAAGGCTGCTTCAACACCCCGTCTCTAGAGCGGCCTTAACCTCCACGCCACACGCTACGTCTGCCTTACACTCCCTGTGTTCTTCAACCTCGTCCCACACAACCCTCAACCAAAACAGGCTTTGTTTCCTTTCAAATTCTTTTACTCGCATTTTATTTCCTTTTATTAGGTTATTGTTTGTTTGTATTTCTACACGTTTCTTCGAAATCATGTTTTACAAACAGAAGACAAAAGCAGCTTTTAATTTTTTTTTGATATGCAGAAATGCTACGTGAAGAGAACTCCAAGCAATGCCGCTCACCAGCCGCGTGTGTTTGTGTGTGTGTGTGTTTGTGCGTATTTGTGTTTGTGTGCGTGCGCTACAGTCAGCTGTTAGAGGCCTTGAACCCACATGACTGCACCACCTCCAGCTCTTCCTCTCAAACCTCTCTGATCTTTACAACATAACCAGAATTATTTGACGTAATCAGAAGCCAAGGCGTTGGTTTGAGGAAGTTTGCTACTTAAGCTAGTGTATATCATCATCGGTAACGCTATTCGCTCAAAGCTAACAGTGAAGGAATCTTAATTTGCTCGTAATGTACATCTACTTTCGCCCCTCGTGCTAGATTTGATACTGAAAAAGAGCGAGTCGTACACGTAAATACAGTATTTCAGCTCATGTGTATATAAATTGTTCAGTACTAGAAGTCCCTGCACGGCTCAGATGATTTCATACATTTTATGGTTGCGAGACATTTCAGTTTTGTGTTTGGTGTTTGTTTTTATTTTTTCAGACGCTGCTGCTTATTACAGGTGTCCTGCAAATCACATTAACATGAGCAAAACTCAACACTATGCAACTTTGTACATTGGCGTAGCAAGACTTTTATCTGATACACTGGTGCTAATAATTATTTCAAATGTTATATTTTTGTGTGAATGTTTTTTTTTTTTCTTCTTTTTTTATTATTATAATATAGAGTTGAGGAACTGTTATTTGTGTAAATATGCTTAAATGATTCAGGAACGGCTGATTTTTAAACCCAAGATCTAACCAGCCACCTCATCGGCTCATTCATGAGAAAAAAAAACAAAAATCAGCCAAAACTTCTGCATAATATATATAATTATATATATATATATAATATGTTCTGTGGTATAATACGCTTGCCTGTATACATGGCTCAGTGTTGCATCATAGCTCTATCATTTATTTTATTTGTGGTTCATTTTCAGCGGATGGTGATGCATAATGTCTTGACCCTTTAACTTGCACACCCCCAAACATGTCTGAACATCCACATGTCTCTAATATTTCATATTTATCGAAATGATTTGCTTTACTTGAGATGGGAAGCTTAATCACGTGTTGATAGTTAACCATCTTTTTTAGTGCCTAAACTTTTGGACGTAATCCTCTAAATGTGGATGTTGCATTAAAGAGTTAAAGAGGTCTTTGAAGTCCAAACGATGGTTTAGTACATTTCACTGTTTGTTGCTTACTGTTACCGTATCAGTAGTTCCTTCAGTTACAGTCTTACTCGGACAGGTTTGCTGAATTTAGCAGTTCCTCAGCTGACAATGTCACATCGAGAGATTCAACTATGGAAAGTGCCACTATAAAAAACATCAGACATATTCTAGACCTCCCCTCTCTACCACTGTGGACATAAGTGCAACACGTACACGTTTATGTATAAAACAGTATTTTTAATTTATAATGTATCAAGTATTTGTGATCTGTTGTTCTACAGTTAAGAGTATGTGTTTGCTGCACAGTCTTTATGTGATCCTTTGGTTTTAGAGAGTGTAATGGTTTTTAAAGACTCCCTTCCCTCTGTTTTAATCAAGGCATTAACAAACACACTCACAGGACCTGACACACCTCTGCTCGATACCCATTTGCCTGTAAAATCAATCGTAACATTTGAATA

Function

symbol description
lamc1 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including animal organ development; detection of light stimulus involved in visual perception; and retinal ganglion cell axon guidance. Predicted to be located in extracellular region. Predicted to be active in basement membrane. Is expressed in several structures, including central nervous system; eye; median fin fold; musculature system; and optic cup. Orthologous to human LAMC1 (laminin subunit gamma 1).

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K05635 LAMC1; laminin, gamma 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14283392_14361256.mRNA True 8746 mRNA 0.46 36 14282136 14363133

Neighbor

gene id symbol gene type direction distance location
CI01000004_14266999_14280382 DHX9 coding upstream 1527 14266999 ~ 14280609 (+)
CI01000004_14172465_14263988 RASAL2 coding upstream 18148 14172465 ~ 14263988 (+)
CI01000004_14165407_14171091 ANKRD45 coding upstream 111001 14164803 ~ 14171135 (+)
CI01000004_14105873_14111615 PLK3 coding upstream 169431 14105471 ~ 14112705 (+)
CI01000004_14104283_14104432 NA coding upstream 177451 14104283 ~ 14104685 (+)
CI01000004_14371097_14380914 NA coding downstream 6928 14370061 ~ 14380914 (+)
CI01000004_14412728_14424282 SMG7 coding downstream 49595 14412728 ~ 14424866 (+)
CI01000004_14448323_14458776 NA coding downstream 83372 14446505 ~ 14459181 (+)
CI01000004_14498216_14504721 NA coding downstream 134921 14498054 ~ 14505155 (+)
CI01000004_14507781_14513019 NA coding downstream 143427 14506560 ~ 14513444 (+)
G33150 NA non-coding upstream 80269 14164219 ~ 14201867 (+)
G33144 NA non-coding upstream 92246 14177406 ~ 14189890 (+)
G33163 NA non-coding upstream 126374 14155491 ~ 14155762 (+)
G33137 NA non-coding upstream 168648 14112989 ~ 14113488 (+)
G33122 NA non-coding upstream 234652 14046584 ~ 14047484 (+)
G33180 NA non-coding downstream 2186 14365319 ~ 14365540 (+)
G33181 NA non-coding downstream 3106 14366239 ~ 14366447 (+)
G33108 NA non-coding downstream 67858 14430991 ~ 14431234 (+)
G33096 NA non-coding downstream 100073 14463206 ~ 14473902 (+)
G33644 NA non-coding downstream 165397 14528530 ~ 14528781 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 245236 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 1626425 12646838 ~ 12652570 (+)
G31865 NA other upstream 2086989 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 2614477 11666900 ~ 11667659 (+)
G31710 NA other upstream 2639736 11637251 ~ 11642400 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 728111 15091200 ~ 15097173 (+)
G34220 NA other downstream 1576224 15939357 ~ 15939950 (+)
G33815 NA other downstream 1700282 16063415 ~ 16066464 (+)
G34400 NA other downstream 2614195 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015628 lamc1 coding NC_007113.7 CM002886.2 35880600 ~ 35979178 (+)
bowfin (Amia calva) AMCG00005062 lamc1,LOC106599430,LOC106569067 coding CM030140.1 CM030140.1 14433982 ~ 14452508 (+)