CI01000004_14448323_14458776


Basic Information

Item Value
gene id CI01000004_14448323_14458776
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14446505 ~ 14459181 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14448323_14458776.mRNA
ATATAAATACACAAAGATACCCAGTCTCATCACACCTATAGACAATATTGCAGTGTAAAAAGCTTGGCTAAAATGCCCAGTTGAATCTAAATAATGATTAATATTTATATTGATATTGCCAGCAGGTTGATTTCAAAGCCTCTACATTTGTGTTACTAAAGCAAACAAACTTTTGTTCCTCAAAAAATGTTTGGCAAAGAGAAAAAAAAAAAAATATTTTTTACAATTGAAAATCCAGCTCACTGGATTCATTTATTCAGCTTCAGTATCATCTGTACAGGTGAAGTTGTATTTTGTAATTACATCTTTAGTTATTAAACACTTGTAAATGTGATGAGAGTATTTGGTATAGGCTGTAGCTCTGTGTGAATACAGGAGATTATAAGCTTATATTTGGTGGCGGAACAAAACTCATTGTTGAACCAGGCAAGTATTTGTTTCTAAAAGTTGCAAACCTTTGCTTTATATACCAGGTATATGTTTGCGTTTGGTTTAGTCACGTGTAATAAGTTTTCTCATTTTACTCATTTAAATCACTTTTTTTATGCAGCACATGCATTGCAATGAAATAAATAGAGGGATAAATTGAAAACGGGTGAAAGCATGATCTCTGCTGGTCTTTTGTTACATACCAACTCATTAGGTTCATTTATTTGTAAAATCATTCATGAACTGCGCATTTTTTACAGTATTGATGAAGAGTATATTTGTGAGAAAGCAGGGAGTTATTGCTAAAGACGAAATTGGTGTGTGACTACTGGAAACTTGAAAGTCTATTTCGGCTCTGGAACTAAACTAACAGTTGGAACCAGTAAGTGTTTTGTATAGATTTGCATACATTCCTAATTTACTAGTATCACTTTTTATAGAGAAATACATATGTTGCAGAACATGTTTCAACAAACTTAGTGTGTCAGTGTGATGAGTTTTATGCAAAATTATAGTGCTTAATACCTAGCACAAGTGAAAAATGGTTGTTTTTTTTTGCTTGTTTGTTTTTATGATATATGAGATGATAGTCATAGGGTTTTTGATTTGTGCTCTGACATTGTGTGAATGCTGGAGTTGGAGGAAAAGTGTTCTTTGGAACAGGCACAAAACTGATAATCCAAAGCCGTAAGTTCATAAGAATCAGTGATGCTTACATTAAATTGTTTTATTTTGTATTTATTAGGTTAAGAATCGAGTGATTTTAATTAAAATGCAGCAAATACACTGAAGATTATCTTTGGGACAGGCACTAAATTAACAGTCAATGCCAGTAAGTTGATTATTCTTGGCCATGTTTACTTCAGAGGAATAATTAAATAAAGTTTATTCCATGTTGATGTAGTCTTCAGGAAAAAATGACACAAATTAGAAAACCTGTTTTAATAACCTGATCATTCTGGTTAAGTTCATATGTTTCTAGACAATTCTGTTTTGAAGCTGCCCCTTAAACAATCAGCATGTTTTTGTGTAGCTGTATATCTGTGTGTGACTTCTTCTGGAGCACAGAAAATAATATTTGGAACGGGCACAAAGCTCACTGTAAATACAGGTAAATAATTTCTATTTGCACTTTAGATTTAGATCACATCTCTTAAATACTCAAGCTAACATGCAAACAAGAATAATCTTGTATCCTCTTGCACTATTATTAAGAGTGCAAATAGAAGTGCTTTATTTAATACTGGAGGTACACTTTAGGAAAAACGTGAGAAAACAGTAAATTTAGTAATGTATTTAAATAATGCTAAGCATATGTGTATGTTTAAATAAGGGAAATGTTAATGTAGAGTTTGTGCTGACAGTGAGGTGCTCAGATAGTGTGCTATAATGAGTTATAGTTATGACGCTTCACATTGTGTGACTGATGGATATGGAAAAGTGATCTTTGGTTCTGGCACAAAATTACACGTTAGTACAAGTTTTGGTTGTGTGTTGTCATGTTGTGTGACTACTGGAGGAAGTTATAAGTTGATCTTTGGGTCGGGCACAAAGTTGATAATTGACACAAAAAGTTATTGTGATGGTAAACTGCATTGTGTGACTTCATCTGGACTCTATCAAATCTATTTTGGCTCTGGAACCAAACTGATAGTTGAGACAAGTGAGTTGATTTTAGTTCTTCAGGACAGTTTTTGTTCAGTGATCTGGTACTGTGTGACTACTGGAGGTGGAGGCTACAAGATTATCTTTGGGACAGGCACAAAGTTAATAGTTGAAAAAAGTGGACTCGATAAGCTTATATTTGGGACAGGCACAAAGCTATTCATTGAAACAACTATATCACATTGTGTGACTCAGACAGGATTACAGAAAGTGATATTTGGGAAAGGCACAAAGCTCATTGTAAATGCAGCTGGAGATAAGATTATCTTTGGGACGGGTACAAACCTGATAATCGAAAGAATGGTCTTATGTTGTGTGACTTCTGCAAGTGGAGCTTACAACAAGCTTTTCTTTGGGAATGGCACAAAGTTGATAGTTGAAACAAATTCACTGAGGAGAATTAATTTTCACATCGGTAGTTTTTGCTTAGTGGTCTTACATTGTGTGACTTCTGGAAGTGGAGTTTACAAGCTTATCTTTGGGAAAGGCACAAAGTTGATAGTTGGAACAAGTGGAAATTACAAGCTTATCTTTGGGAAAGGCACAAAATTGATAGTTGAAACAAGTAGTTTTTGCTTAGTTGTCTTACATTGTGTGACTACTGGAGGTGGAACTGGCAAGCTTATCTTTGGGAAAGGCACAAAATTGATTGTTGCAACAATGTCAAAGGTAACTTATATTGTTGCGGAAGTTAATGTAGAGATGATATATAGTGTGTGTCTCAATCTGGAGGCTGGAAAATCCATTTTGGTTCTGGAACCAAACTGACCGTTGAAAGTAGTAAGTGATTTGTAAAAATGTTGAAACATTTGTGGCAAATTATTATTTCCTCCAAAGTTTAGATTGTTAAATGTATAAAGCAGTACATTATCAAATTTTTGATACATTTACGGTAGAAAAGTTACAAAATATTTTCATGGAACATGATCTTTACTTAATATCCTAATAATTTTTGGCATAAAAGAAAAATCTGTAATTTTGACCCATACAATGTATTGTTGGCTATTGCTACAAATATACCCGTGCGACTTATGACGCTTTTGTGGTCCAGGGTCACATTTAGTCACACATATACCAGACTGAAATGGTTATTTACAAGTGTAATTTACTAATGATCATTCATTACAGTGCTTTAAAATGCTTCTTTAATATAACTTATAATTACAAGTCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14448323_14458776.mRNA True 3267 mRNA 0.34 12 14446505 14459181

Neighbor

gene id symbol gene type direction distance location
CI01000004_14412728_14424282 SMG7 coding upstream 21639 14412728 ~ 14424866 (+)
CI01000004_14371097_14380914 NA coding upstream 65591 14370061 ~ 14380914 (+)
CI01000004_14283392_14361256 LAMC1 coding upstream 83372 14282136 ~ 14363133 (+)
CI01000004_14266999_14280382 DHX9 coding upstream 165896 14266999 ~ 14280609 (+)
CI01000004_14172465_14263988 RASAL2 coding upstream 182517 14172465 ~ 14263988 (+)
CI01000004_14498216_14504721 NA coding downstream 38873 14498054 ~ 14505155 (+)
CI01000004_14507781_14513019 NA coding downstream 47379 14506560 ~ 14513444 (+)
CI01000004_14864427_14865483 ING5B, ING5, ING5.L coding downstream 404917 14864098 ~ 14865753 (+)
CI01000004_14877615_14885956 PAK2A, PAK2 coding downstream 418279 14877460 ~ 14886499 (+)
CI01000004_14889786_14894594 KLHL6 coding downstream 430605 14889786 ~ 14894922 (+)
G33108 NA non-coding upstream 15271 14430991 ~ 14431234 (+)
G33181 NA non-coding upstream 80058 14366239 ~ 14366447 (+)
G33180 NA non-coding upstream 80965 14365319 ~ 14365540 (+)
G33149 NA non-coding upstream 87527 14268887 ~ 14358978 (+)
G33150 NA non-coding upstream 244638 14164219 ~ 14201867 (+)
G33096 NA non-coding downstream 4025 14463206 ~ 14473902 (+)
G33644 NA non-coding downstream 69349 14528530 ~ 14528781 (+)
G33662 NA non-coding downstream 75897 14535078 ~ 14535344 (+)
G33919 NA non-coding downstream 298951 14758132 ~ 14792115 (+)
G33924 NA non-coding downstream 308833 14768014 ~ 14808289 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 409605 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 1790794 12646838 ~ 12652570 (+)
G31865 NA other upstream 2251358 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 2778846 11666900 ~ 11667659 (+)
G31710 NA other upstream 2804105 11637251 ~ 11642400 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 632063 15091200 ~ 15097173 (+)
G34220 NA other downstream 1480176 15939357 ~ 15939950 (+)
G33815 NA other downstream 1604234 16063415 ~ 16066464 (+)
G34400 NA other downstream 2518147 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015643 traj5 coding NC_007113.7 CM002886.2 36097984 ~ 36098047 (+)