pkp4 (pkp4,LOC107688875,LOC107705586,LOC107660066,LOC107709738)


Basic Information

Item Value
gene id pkp4
gene name pkp4,LOC107688875,LOC107705586,LOC107660066,LOC107709738
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 5311624 ~ 5342802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242106.1
CTTTGTCAAACCCGAATACTTATAAATCCAACCAACGGAAGACCGAACACATATATTAAGCAATTCAAAGTGACCAATTTGTGGGCGTTTATGCGCACTATAAGCAGACGGTCACTCATATGACCATTTAGGGCTCGTCGTTTTCGCGCAGTAACCGTATTTTCTACGTACTTCGATGGGAACTCCATTTTTTCGAGTCAACTCCTGTTCTACTACATAGCAACACATTTAAATGCCCTGAAACGGCATCTCTCTGTGTGGAGCGTCTACGTCACGCGCTCTGACCCTCTTGCCCATGGAAGCGCGCGAGACCCAGTCGGAGCCGCCCGTTCATCGCGTGAAAACACCTCTGGGAAGAATGTCATCCAGTGATTCCGTTGCAAATGGATTTAGCCGTCTCCGCGAATAATTTGCATTTCGGCGGTTTTGCGgGGGAATGCCTACTCCAAGGCAAAGCCCTGTGGAGGAAAGGGAGGTGCTGAGTGGTGAGGGAAgatccaacaacaacaacatggcGACTGATGCCACCACCACCAACCTGCTGGCCTCTGTTAAAGAGCAGGAGCTGCAGTTTGAACGGCTTACCAGAGAGCTTGAAGAAGAGAGACAGATTGTGGCCAATCAGCTAGAGCGATGCAGGTTGGGGGCGGAGTCACCAGGTGCTGCGAGTGACAGctcttCTGAGAAGTCTCTTCTGTGGAGATCTGcagAATCCTCAGGTGCAGGTGTGTCTAAGCCGCCGGATGGTTGCTCCTCGCCCACAtttggggtcagaggtcaggggtTACTTTACTCTCCCGAATTGGAACAGATCTCCCTGCGTGAAAGTGAGGGGTCTGCGCCAAACTCACGCAGCTCCACTCAGATGAATTCGTATTCAGATAGCGGATATCAGGAGGTGAGTGGTTACTATAGTAACACCGTGACGCCCAGACGATCGGAGGGGAGGTCCCAGTCGACAAGCTCCGCCCCAAGTGGAAGCCCCACCCTCGCCATGAGTTCAAGGGCTGAAGGACAGGCCTCGGCGCAGGTGGGCAGCAGCGGTCGTGTCATGAGGCGTGTCAGTTCTGTCCCCTCTCGTGCCCCGTCTCCCCTCTACACCCCGTCCCCACCTGCGTCTCGCCAGCCTCTGCGTACCACCCTCGGAAGCCCCTACGGCTCACCCATAGTCTCAGAGCCCCGTCCTCTACCTAGTATATTTCCTGGCACCACCTTGCCTCCGGCCTCCAGCCACGCTCCTGAACCACCGCACTCCAGCTACATGGGACGGCATGGAAATGGGACGGGGTCAGAGTCTGGGTCACCGACGCTCCTGCGGGCCGGTATGACTGCTCAGCCTCAGCAGTACGGGACCCTGGGGAAGCACGATACACGTGCATATGACAGCACTCACTCCTCCTTTGGGACTCGCGCCTACGACATCTTTGAGAGGATGGTCCTTTCAAGACCGGATAGCCTTACAGGCTTGCAGACCTCATATAGTCAGAACAGCCAGTTAGGCCAAGAGGCCCGTTCCCCTGACTGCCACGTCACGCCAATCTATGAAGACAGAACCTTCCAGAACCCTCTGTACCAGAGCCCCACGCACGGCTCCCAGAGCGCTATCTCCAGGAACAATACAGGGTTTGGTACTTTACAAAGGACCACTAGTCAGTGTAGCACTCTGAGGTACCAGCGAGGGTTGTTCTCAATGGGCTCCATGGCAACGCACTCTGACACCTATCGTCCCGCCCACTACCGCCAATCCGACCCGAACTACACCAGACATGCAGCTGCGGTCGACAACGCCATCACGCGCTCGCCTTCCATAGACAGTGTTCACAAAGATCCCAGGGAGTTTGCCTGGAGAGACCCTGAGCTGCCAGAGGTGATCCGAATGCTGCAGCATCATTTCCCTTCTGTCCAGGCCAACGCTGCGGCGTACATACAGCATCTCTGCTACGGAGACAACCGCATAAAGGCAGAGGTGTGTCGACTCGGGGGGATCCGACACCTGGTGGATCTGCTTGACCACAAAACCCTGGAAGTTCAGCGGAACGCTTGCGGAGCTCAGCGGAACCTAGTGTACGGAAAAGCCACCGACGATAATAAAGTGTGCGTGAGGAATTCCGGCGGAATCCCAGCTTTGGTTCGTCTGTTGAGAAAAACTCCAGACAGTGAAGTGCGAGAGCTCGTAACTGGAGTGTTGTGGAACCTGTCGTCATGTGATTCTGTGAAGATGACGATCACTCGGGACGCTCTCGGGCCACTTACTAACACGGTCATCATCCCTCACTCCGGGTGGGGTGCGGCCCCTCAGCGAGaggaccagaaactcaaactGCACTCATCTTTGGTCCTGAGGAACACCACTGGATGTCTCAGgaaCCTGAGCTCAGCTGGAGAAGAGGCCAGAAGGCAGATGCGTTGCTGTGAAGGCCTGATAGATTCCCTTCTCTATATTATCAAAACCTGTGTAAACACCTCAGATTATGACAGCAAGATTGTGGAAAACTGTGTGTGCACTTTGAGGAACCTGTCGTACCGTCTTGAGCTGGAGATGCCTCCGTCTCGGCTGATGGGAACCCAGGACCTGGACACGCTCTTGGGCCCTGACACCTCCAGTAAACAGGCCGACTACAGCTGCTGGGGGCtcaggaagaagaagaagaagaggtcCTGGCAGGATCAGCAGTGGGACGGCGTGGGGCCTATTCCAGGATTTTCTGGAAGTCCAAAGGGGGCAGAGATGCTGTGGCATCCATCTGTGGTCAAACCTTACCTCACTCTGCTGGCAGAGAGCTCAAACCCAGCCACGCTGGAAGGGGCGGCTGGGTCTCTGCAGAATCTCTCCGCCGGAACATGGAGGTTTGCGGCCTACATCCGTGCTGCTGTACGTAAAGAGAAGGGTTTGCCCATTCTGGTGGAGCTACTAAGAATGGATAATGACAGGGTGGTCTGCTCTGTGGCCACTGCTCTACGGAACATGGCTCTAGACGCCAGGAACAAGGAGCTCATTGGAAAATACGCCATGCGGGACCTAGTGACCCGTCTCCCTGGCAACGGGCCCTCCCTGCTGTCGGATGAGACGGTGGCGGCGGTCTGCTGCGCTCTGCACGAGGTCACCAGCAGGAATATGGAGAACGCCCGTGCTCTCGCTCAGACGGGCGGCATCGATAAACTGGTTACAATCAGCAGAGGACGTGGGGAGAGGTACTCCATGAAGGTGGTCAAGGCAGCGGCTCAGGTGCTCAACACTCTGTGGCAGTACAGAGATCTGCGTACCTTCTACAAAAAGGATGGATGGAACCAGAACCACTTCATCACCCCAGTGTCAACACTGGAAAGAGACCGCTACCGCTCCCAGCCTACTCTGCCAACCAGCAACGTGCAGATGTCACCTGTCATCCAATCAGGCGGTAGTGCCACCTCTTCCCCTGCCATGTTGGGTATAAGAGGTCATCGCTTAAATCAGCGGAGGACCCAGTCGTCTATGCAACTTCATAATTATTATGGAGACGCCAACAGAAACACAAGTCAATATACAGGGTCCGGAAAGCAGTCTGCCTATTTTATCAGTTCCTATCCGTCTCCTTCAGCCGAGGAGTCCCGTAGATCACAGCAAGGACGACTCTACTACCCAGAGGAGGGAAATCAAAGCACCTATGACACTTTTGGAATGTACCTGTCGTCTCCGATGGGCTACGAGGATGCGTACCTGGATGAGCCGGTCCGTTATCCCGTGGTGAGCGAGAGGCAGGTGCTCAAACCCAATACCAACTACGTGGACTTCTACTCCACCACACGCAGGCCTTCATACAGAACTCAGCCCTACCCGGCCTCACCTGACTCGTGGGTGTAGGCATGTACGTGTGTGCATATTCCTTCATGTAAATGTGTAGCCATAGATAGAATATTGCAAGGAGGCGTCACTCCTTAAGACATATCTGGGTCGGTGGATTCCAAGACCGTTGTATGGACAAGCTGTTGCATATGAAGTGACTGGTTCATTATCATTCGAcaaattgaatttgttttgtgtgtgcaaaCAAGCCCTTGCAGcgacattcattttcatttggatgtttgtgtgtgtgtgtgtgtgtgtgtgtacataaatgCTCAATTAAATTAACTTGAATTAGTTTGACCTGGGATTGAGTGTGAGCCAAAGACTTTACTTTTCAGTACCTGCAGTTTTGAAACAGTAAAGCGTGTTTAAGGTCTGATTTACTGAGAACTTGAACcatctttttatgattttaatttttcatgttttttttaatctcatttttatttgtatggcATGTTATTATAGTCACCTCGGTTTTTGAGCCAAATGAAAAGGtgtaactaaattaaatattggcTGAAATggctaatgaataaataatagcagtgtaaaagaaaaaaaaaagaaacgctaataataatgttctgtgcattggaaaacaaaaacgtcatttTGTCTGGTCTCATTGCTGTAACCTACTTAATGTAAAGATTAATGTATGTTCCATGGAGTCTTGTACAACTACGTCAGTTTATTGTACAACCGTGATCTGTGCTACGAAGCACAAAAAACTGTGCCATGATAAATCGCTATGTAGaactgtgtgtatatgtgagaGACCTTATGGAGGCAAAAGTTATTACTATCAGAATATTTAGATGTAATAAagataacatttgtttttttttttaaa

Function

symbol description
pkp4 Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion and cell-cell junction assembly. Predicted to act upstream of or within cell adhesion; positive regulation of GTPase activity; and positive regulation of cytokinesis. Predicted to be located in cell junction. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Orthologous to human PKP4 (plakophilin 4).

NR:

description
PREDICTED: plakophilin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242106.1 True 4685 mRNA 0.51 23 5311624 5342802

Neighbor

gene id symbol gene type direction distance location
tanc1a tanc1,tanc1a,LOC107743188,LOC107688874,LOC107660065 coding downstream 2568 5247314 ~ 5309056 (-)
marchf7 LOC107660063,LOC107705582,LOC107742244,LOC107677578 coding downstream 158697 5139374 ~ 5152927 (-)
LOC122347505 fam171b,LOC107742147,LOC107660062,LOC107584765,LOC107705581,LOC107555401 coding downstream 172991 5131256 ~ 5138633 (-)
gulp1b gulp1b,LOC107677600,LOC107741734,LOC107705580,LOC107660061 coding downstream 236545 5033954 ~ 5075079 (-)
pjvk dfnb59,LOC107555423,LOC107584822 coding downstream 302661 5005451 ~ 5008963 (-)
c6h7orf57 LOC107688921,LOC107709739,LOC107555435,LOC107705587,LOC107660069 coding upstream 1509 5344311 ~ 5349557 (-)
gpd2 gpd2,LOC107709740,LOC107660071,LOC107705589,LOC107688873 coding upstream 32129 5374931 ~ 5399921 (-)
slc15a1b slc15a1b,LOC107660134,LOC107705529,LOC107584761,LOC107555411 coding upstream 91609 5434411 ~ 5443079 (-)
dock9b dock9b,LOC107705592,LOC107688868,LOC107555440,LOC107660078 coding upstream 102349 5445151 ~ 5509919 (-)
bmpr2a LOC107555441,LOC107748564,LOC107688866,LOC107705593,LOC107584759,LOC107660075 coding upstream 167664 5510466 ~ 5528961 (-)
G42960 LOC107584764,LOC107677591,LOC107743335 non-coding downstream 72687 5139399 ~ 5238937 (-)
LOC122346705 NA non-coding downstream 72929 5236821 ~ 5238695 (-)
G42955 baz2b,LOC107677545 non-coding downstream 82653 5133802 ~ 5228971 (-)
LOC122346706 NA non-coding downstream 119625 5185601 ~ 5191999 (-)
G42956 NA non-coding downstream 138192 5159344 ~ 5173432 (-)
G43019 NA non-coding upstream 311419 5654221 ~ 5654958 (-)
LOC122346635 NA non-coding upstream 402637 5745439 ~ 5747394 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding upstream 404964 5747766 ~ 5755464 (-)
G43161 NA non-coding upstream 653154 5995956 ~ 6483393 (-)
G43173 NA non-coding upstream 675638 6018440 ~ 6023510 (-)
G42958 LOC107742327 other downstream 80914 5229456 ~ 5230710 (-)
sumo3a sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868 other downstream 425275 4882787 ~ 4886349 (-)
LOC122347558 cycsb,LOC103040542,LOC108273362,LOC108430847 other downstream 486158 4818191 ~ 4825466 (-)
gpr155b gpr155b,LOC107740589,LOC107581372,LOC107584777,LOC107705544,LOC107677583,LOC107660045 other downstream 537078 4766381 ~ 4774546 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other downstream 573082 4709290 ~ 4738542 (-)
adam23a adam23,adam23a,LOC107748557,LOC107705602,LOC107660086,LOC107688856 other upstream 279884 5622686 ~ 5639926 (-)
arl6ip6 LOC107688850,LOC107748576,LOC107705609,LOC107660093,LOC107566311,LOC107555419 other upstream 348679 5691481 ~ 5699650 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other upstream 380666 5723468 ~ 5736620 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other upstream 615991 5958793 ~ 5966604 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other upstream 699074 6041876 ~ 6524950 (-)

Expression


Co-expression Network