LOC122347505 (fam171b,LOC107742147,LOC107660062,LOC107584765,LOC107705581,LOC107555401)


Basic Information

Item Value
gene id LOC122347505
gene name fam171b,LOC107742147,LOC107660062,LOC107584765,LOC107705581,LOC107555401
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 5131256 ~ 5138633 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242859.1
ATCGCGTGAGCTGTGACGCAACACGCGCACCCGTCTGACTCCAGCAGCTCCCTCAGATATCCATCGGTCCACCCGAGAAGCGCGATGTGACCGTGACACGAACAGCCGCCCAAAGAGAGACAAACAGCGACGTTCTCCTTCTCCGTGTCACTGAGTGCAGTTATGTCTGAGACGCCATGCCAGACCTTTCGGGGTGTGTGCTCCTCGCCGCGCTGCTGATTTTCTGCGAGGATGGGTACGTGAGGAGAGCGGAGGGTGGGGTGCTCGCCTCGCGGTCGGAGGAGGACAATGCCAGCGACGCGCAGACGTCCCCGCTCAAGGGACAGGGCAATGCGACGGTGCCTCCATCAGAGTCACTCCTGACCCTGAAGATTTGGGTTAAAGATGCATCTAGCCAGAGGTTCCTGAAAGGAGCTCTGGTGGGTGTGTTTTTGAATGGGTCCCAGATTCATTCCAGCCAGACTCTGGACAATGGGGAGGTCACGGTCACTGTCCCATACCACCTTGGCCTGACCCTGACTCTGGTGGCCAGCATGGAGGGTTATGTACTCACCCAGCTGCCTTGGAAAACCACCAAGATGCCCATTTATTCTGTTATCACATTGTCCCTGCGCCCTCAAACACAAGGGAACATCTGGCTCTTTGATGATACTGTTCTGATAACTCGAAAAGCATCTGATCTGTCATTTCAACCGAGTGTACAGTTTCACAAAAGCCTCCTCAAACTGTCCGAGAACACTACCATCTCCATGTTGTCAGCCTATCTGACAGCCCCAACCCTGCCTATAGAAAAAGACTCACATTTCTTTACTCTAAACCTGAGCGGTAAAGGAGGTTATAGGAATGTCAAGTTAAACCCCTTGGCTATGATCAGTGCCCAGTTAGTGTCTAATGGAAAAGAGGTTGACGTCAAAGGACCCATTCAGCTCAAAATACCACTTCCCTACAACACCCACATGCGACCGTCTGATTCACTGCCTGCGTGGACCTTCGACATGACCATAGGTACCTGGGTAAATAAAGGTTTAGGCACTGTTCAGATGGACACAAACGGCCTAGTCTGGAATTACGTAGCACCTCAACTTGGTAATTGGATTGCTGCACCACCACCATCGTCAGGTTATATGGGGCTCGCAAGCTCAGTGGATTTCATTTCCTACCACACATACCTTCTTGTGGGTATCTTGGGAGGAACTCTTGTGATAGCCATTGGATTTTTATCTGTGATTGTATTTCACTGCAGAGATGTAAACCATGAGGCTGGAAGAAAGCGATGGAATTCCACCAGGCTAACTGTACTGAAGAAAGACCAGACCACTTCCACCAGCTCTGATGAGGCTCAAGAGCTTTTCTTTCATAATGGGGACCGGTCTTACTCTCTAGCTGCAAGAGGCATCGGCCACGATGCATCTGATTCTCCACGACACCAAGCCAACTACAACATTTATGTGGAAAATGTTGGCCGACCAGCTGGCAATCTTTATGAGAATATTGGGGCTGTGGGATTAGAAAGCTTCAGAATCCCAGTGTCTAATCTCTATGTTAATAGTGATGAAGTTGCAAAGCTAAGGGAAAAATCTGAACAGAATGGCGCGGAGAATGTAGTTTTCAAAGACAAGCTGTTCCACATTTATAACCAGTCGGTGGCAATTGTACCGGCCCCAGAGTTGTTCGCTTCCCAGGGACAAGCTGACCCATCTGGAAGTAGATCTGCCACTTTCCCACGGAATGGCATGGAGCATGGTGCTCAGACAGAGCGTAACTTAAAAGACAGTTTCACTCAGACATTACCTAAAGTTCCCCAGCAGGACAGCGATGAGCAACAGGCTCTTGAAGGAGCACAAGCCATTGCTGCAAACCCAGGGTTATGGGGCCGCTACAGTCATCTCCTGGAATCTGTATCTGTCCCAGGAACTTTGAACGAAGCAGCTGGAATGGGACCTTTCCGAGGAGAACTCCAGGGAATATCAGAGCAAACCTTGCTGGAACTCTCCAAAGGTAAGCCGTCCATTCACCCGCCCCGGGCATGGTTTGTGTCTCTTGATGGTAAACCAGCTGCCCAGGTTCGTCACTCTGTGATTGAGCTTCAGGGTAGACATCGTCCAGGCAGCAGCAATGACACAAGCTTGGACTCTGGAGTGGACATGAATGAGCTGCAGCAGCCTCTGCGGAAAAGTGAGGAACCTTCAAGCTCCAGCATGGCTAAAATAAGTGGAAATCAAGAGCAGGACTTGAGCAGCAGTGAAATTGGGAGTCCAGAGGACACATCCCTTAGGAACACCCTGGAAGGCAGCAGTGCAGCCATTCCCAACATCCCAGAGGACAGGGATGCAGGGGACACCTCTAGTGAGTCCAAATCTACCCCTCCACCACGGAGACTGCGGAAGGTTCGAGACAAGAAGCCTGACAAGAAGACATCTCGACACATGAGGGAGGAGAGACCCCAAACGAAGCACTAACTGAAAAACCTGCGTATAGCCGTAGCTTTTTGGACTCTGAAAATGGTTTTGATCAAATTGCCttataaacataaacatcaggaagaatgaataaaactaaattgcCTGTCTAACCTGCCGTAGCTCAAAGTCGATTTCTGTGGCTGTGCTGTATCCAGCATCTTTGTCAGCAGTTCATTTGTACACAGTTTCCCAGCCACACTGTACAATGTTTTTACAAACTTCTTTGAAAGAACATATTTCTTTACCTTCAAAAGTACATTGtaaaagtatgtatatatatatatctctatatatatatctaagtatttttaaacatttgttgcCCTGTGAGCACAATGCTTGTACCCACAATGCTCTTCTAGTGAGtctgaaaaactgtttaaatgctATCAATTTGGATCTCTTGACTTGCTTGGAATCAGTTTTTGTTCTTCAGTTCAGTTCTACAGACACTGAAATGTAACGCAAGGAACTGCCACACAGTGCCATAAACAATTATAAGATAAATTGTGGAAGAATTGAGCACTGTTAAACTAAGCACTACATATTCTCCAATTCAGAAAGAGCACCAGTGTGTTGCAAAGTGTTTTCTGAGGGAGCGACTTGGGCCTTTGAGGTcatatgctgttttaatgcactgtacttatttaatgtattattgctAGTCACATTTGCATGCCGTccattgtgatgcttttatcattCAATGTTTTCATGTGTAAGAATGTAGTACCCAAAAACATTGATGATATGCCTCAGGTTATGGTTACCTAGCATATTAAGATGTTTCTTGTgctaatgtgttttgtgtgtgaaatatttcttCACAAATTGACAACAAATCATTATCGACTCATGTATTGAATGTGTTGGAGCtttttcagctttattattTTGGACAATTAATTGTAACTTTAATTGTTATCGACAGTTACAATAAAACACTAGCTTCTTGTTCACAGGCATCAACTTTTAATTAAGATGGCAAACTgagtttgacattttaaatgaagtatgACTGAGGAGAAATCAAATTGTGTCAgctgaatgttttaatgtaatttatgttgtactgtagcatttattatttcgttaattgtaatatatattataatgatttctcaACACACTGGTTTAAATGGCTCATGAGCCATTCCTGGATGCTTTAAAGTACAGCTTGTAATCAATCTGCCTTTTTGTGCACATTTAATAAAGGTacttgaccaaaaaaaaa

Function

symbol description
fam171b Predicted to be integral component of membrane.

NR:

description
PREDICTED: protein FAM171B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242859.1 True 3696 mRNA 0.45 8 5131256 5138633

Neighbor

gene id symbol gene type direction distance location
gulp1b gulp1b,LOC107677600,LOC107741734,LOC107705580,LOC107660061 coding downstream 56177 5033954 ~ 5075079 (-)
pjvk dfnb59,LOC107555423,LOC107584822 coding downstream 122293 5005451 ~ 5008963 (-)
pcnt pcnt,LOC107555398,LOC107677569,LOC107660059,LOC107743407,LOC107584825,LOC107705497 coding downstream 139812 4956348 ~ 4991444 (-)
trnak-uuu_105 NA coding downstream 175638 4955546 ~ 4955618 (-)
myo10l1 myo10l1,LOC107581381,LOC107740578,LOC107705496,LOC107677542,LOC108430864,LOC108272349 coding downstream 193013 4894092 ~ 4938243 (-)
marchf7 LOC107660063,LOC107705582,LOC107742244,LOC107677578 coding upstream 741 5139374 ~ 5152927 (-)
tanc1a tanc1,tanc1a,LOC107743188,LOC107688874,LOC107660065 coding upstream 108681 5247314 ~ 5309056 (-)
pkp4 pkp4,LOC107688875,LOC107705586,LOC107660066,LOC107709738 coding upstream 172991 5311624 ~ 5342802 (-)
c6h7orf57 LOC107688921,LOC107709739,LOC107555435,LOC107705587,LOC107660069 coding upstream 205678 5344311 ~ 5349557 (-)
gpd2 gpd2,LOC107709740,LOC107660071,LOC107705589,LOC107688873 coding upstream 236298 5374931 ~ 5399921 (-)
LOC122346990 NA non-coding downstream 249863 4867127 ~ 4881393 (-)
G42644 LOC101169590,LOC106917580,LOC108430882 non-coding downstream 426753 4698903 ~ 4704503 (-)
G42614 NA non-coding downstream 625589 4503734 ~ 4505667 (-)
G42615 NA non-coding downstream 628050 4502720 ~ 4503206 (-)
G42606 abi2 non-coding downstream 656464 4473919 ~ 4474792 (-)
G42960 LOC107584764,LOC107677591,LOC107743335 non-coding upstream 766 5139399 ~ 5238937 (-)
G42956 NA non-coding upstream 20711 5159344 ~ 5173432 (-)
G42969 NA non-coding upstream 32563 5171196 ~ 5172061 (-)
LOC122346706 NA non-coding upstream 46968 5185601 ~ 5191999 (-)
LOC122346705 NA non-coding upstream 98188 5236821 ~ 5238695 (-)
sumo3a sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868 other downstream 244907 4882787 ~ 4886349 (-)
LOC122347558 cycsb,LOC103040542,LOC108273362,LOC108430847 other downstream 305790 4818191 ~ 4825466 (-)
gpr155b gpr155b,LOC107740589,LOC107581372,LOC107584777,LOC107705544,LOC107677583,LOC107660045 other downstream 356710 4766381 ~ 4774546 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other downstream 392714 4709290 ~ 4738542 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other downstream 633838 4493912 ~ 4497418 (-)
G42958 LOC107742327 other upstream 90823 5229456 ~ 5230710 (-)
adam23a adam23,adam23a,LOC107748557,LOC107705602,LOC107660086,LOC107688856 other upstream 484053 5622686 ~ 5639926 (-)
arl6ip6 LOC107688850,LOC107748576,LOC107705609,LOC107660093,LOC107566311,LOC107555419 other upstream 552848 5691481 ~ 5699650 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other upstream 584835 5723468 ~ 5736620 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other upstream 820160 5958793 ~ 5966604 (-)

Expression


Co-expression Network