G52969


Basic Information

Item Value
gene id G52969
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 14236975 ~ 14237439 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU78508
GTCTTACCGTGTTTCCCAGTGTTATTCCCTGTGTTTCTGAGGTAATTCCACACTGAGAGCTGCTCGTTCAGTCTGTTCGGTAAAATCTCAGCTCTTATTTTCCCTTTAACCAGCTGCAGGCTTGACTACCTGCCcccctcacacacaaacacacgcatacacacacatacgcacgcacacacgcacaccggCAGCAAGgcttgcaaacaaaaacacaccatGCAAAAGCTGACACAGTCAAGAGGATGCAGGTTTCCAGctccaaacaaaacagaattccTTCTATTttagtcaaagaaaaaaaaaagagtgtgtcTCCCTCGTTCTCCttctctctttgctttcctccCTCaatccttctctctctctctctctctctctctctcactcactcactcacacacacactctttctctctgctttttTCCACTCAGTAGTCAAACAAAGAGAGGAAAGGAGCTggt

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0043383 negative T cell selection biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process
GO:0045058 T cell selection biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78508 True 465 lncRNA 0.46 1 14236975 14237439

Neighbor

gene id symbol gene type direction distance location
LOC122347913 LOC107750620,LOC107687055 coding downstream 186561 14046280 ~ 14050414 (-)
LOC122347911 LOC107750620,LOC107687055 coding downstream 222117 14012980 ~ 14014858 (-)
LOC122347909 LOC107750620,LOC107687055 coding downstream 234012 14002005 ~ 14002963 (-)
LOC122347908 LOC107750620,LOC107563003,LOC107687055 coding downstream 243722 13991446 ~ 13993253 (-)
LOC122348558 slc7a7,LOC107738042,LOC107683525,LOC107731885,LOC107558406,LOC107574338 coding downstream 292050 13936791 ~ 13944925 (-)
LOC122349841 NA coding upstream 48995 14286434 ~ 14286597 (-)
LOC122349821 NA coding upstream 50377 14287816 ~ 14288006 (-)
LOC122349806 NA coding upstream 51632 14289071 ~ 14289234 (-)
LOC122349819 NA coding upstream 56846 14294285 ~ 14294475 (-)
LOC122349807 NA coding upstream 58227 14295666 ~ 14295829 (-)
G52919 NA non-coding downstream 88520 14147797 ~ 14148455 (-)
LOC122349413 LOC107548777,LOC107683518,LOC107738092 non-coding downstream 161461 14074359 ~ 14075514 (-)
G52901 man2b2 non-coding downstream 174702 14061433 ~ 14062273 (-)
LOC122348499 NA non-coding downstream 199947 14036586 ~ 14037028 (-)
LOC122348277 LOC107687055 non-coding downstream 212320 14024108 ~ 14024655 (-)
G52973 NA non-coding upstream 14360 14251799 ~ 14252039 (-)
G52974 NA non-coding upstream 14712 14252151 ~ 14252481 (-)
G52983 NA non-coding upstream 34347 14271786 ~ 14274056 (-)
G52989 NA non-coding upstream 89060 14326499 ~ 14327608 (-)
G52993 NA non-coding upstream 94245 14331684 ~ 14335913 (-)
G52917 LOC105896813 other downstream 91695 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 146534 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 163276 14069113 ~ 14073699 (-)
LOC122347915 NA other downstream 168475 14065015 ~ 14068500 (-)
G52871 NA other downstream 338652 13897496 ~ 13898323 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other upstream 736264 14973703 ~ 14975168 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other upstream 2322979 16560418 ~ 16564338 (-)
G53797 tpm1,LOC103462590 other upstream 2644454 16881893 ~ 16934252 (-)
serf2b NA other upstream 2809005 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 4428834 18666273 ~ 18669833 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G500114 NA non-coding CI01000344 null 2554701 ~ 2567200 (+)
rainbow trout (Oncorhynchus mykiss) G505316 NA non-coding NC_048570.1 CM023224.2 39371410 ~ 39371666 (+)