G52989


Basic Information

Item Value
gene id G52989
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 14326499 ~ 14327608 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU78542
ttcatgtcacaaaactacattttatggCTCATGAGAGACAAAGTAAATGTCAgcaaattttgttttattgtaaaagaCGGTTGTATTAGACCATTAGGACCTGATGATGTTTTATTCCAAAATGcacaacatttatataaaaaaaaaaggacaacaaattttgatatttctatataatatctaACACGACATCAAGGTTGCCAAGTCTGATGTTCGGTTATAATTTACAGGTATAGTAGCAATGGCACATAATAAggttaaaataaagttacatatacacacacatcagtttTAGTGATGGCTTAGTTGTTAATGTAGTGAAATCTCTTTTCCTGTTGTGAGGATGGCAGATTGAATGACACACAGTATCAGCTGGATCAGAGACAGACCCAAAAGTATGAAGAACAGCACGATGTGCCAGAGAACCACGTTCTCGGGAAAGACGCACATGGACCATGTAGTCTTATCCCCCAGGTAACTGCTGTTCCTGTTAGAGGAAGATAAACACAAGAGAGAAGGAGCTTTAATTGAAGTGCAGGATAAGACCTCATCTAGTGGCCATGCAAAGAACTGCTATTGCGTTGCATTAAGTTAGGTTGTATATGTTCTTACTTTGGCATATTCTCAAAGGGATATTCCCATTTACCACTCTCGACTTGGCATAGTGGCCCAACAGCCAGTGCAGCAATGGCAACACAGGCACAGTAGACTGACCCAGCAACGCCAAacacagaagagaaaacagaattCAGcat

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU78542 True 755 lncRNA 0.39 2 14326499 14327608

Neighbor

gene id symbol gene type direction distance location
LOC122349814 NA coding downstream 4584 14321725 ~ 14321915 (-)
LOC122349812 NA coding downstream 7815 14318521 ~ 14318684 (-)
LOC122349817 NA coding downstream 8807 14317502 ~ 14317692 (-)
LOC122349811 NA coding downstream 10998 14315338 ~ 14315501 (-)
LOC122349823 NA coding downstream 12352 14313957 ~ 14314147 (-)
mettl3 mettl3,LOC107659734,LOC107664282,LOC107595277,LOC107560293 coding upstream 10118 14337726 ~ 14342700 (-)
epoa LOC107753968,LOC107750777,LOC107659733,LOC107664284,LOC107595276,LOC107560292 coding upstream 17002 14344610 ~ 14359357 (-)
LOC122348481 zmp:0000000699,LOC107750788,LOC107753995,LOC107659717,LOC107595334,LOC107560281,LOC107664269,LOC107753981,LOC107560280 coding upstream 32893 14360501 ~ 14367584 (-)
nlgn2a nlgn2a,nlgn2,LOC107750775,LOC107753966,LOC107659731,LOC107564776,LOC103033407,LOC107664280 coding upstream 47442 14375050 ~ 14524570 (-)
dysf dysf,LOC107750586,LOC107749822 coding upstream 405572 14733180 ~ 14794938 (-)
G52983 NA non-coding downstream 52443 14271786 ~ 14274056 (-)
G52974 NA non-coding downstream 74018 14252151 ~ 14252481 (-)
G52973 NA non-coding downstream 74460 14251799 ~ 14252039 (-)
G52969 NA non-coding downstream 89060 14236975 ~ 14237439 (-)
G52919 NA non-coding downstream 178044 14147797 ~ 14148455 (-)
G52993 NA non-coding upstream 4076 14331684 ~ 14335913 (-)
G52992 LOC107659714,LOC107664268,LOC107753996,LOC107595335,LOC107560282 non-coding upstream 31845 14359453 ~ 14360396 (-)
G53000 NA non-coding upstream 241893 14569501 ~ 14570245 (-)
G53095 NA non-coding upstream 503363 14830971 ~ 14890650 (-)
G53091 NA non-coding upstream 511589 14839197 ~ 14920878 (-)
G52917 LOC105896813 other downstream 181219 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 236058 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 252800 14069113 ~ 14073699 (-)
LOC122347915 NA other downstream 257999 14065015 ~ 14068500 (-)
G52871 NA other downstream 428176 13897496 ~ 13898323 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other upstream 646095 14973703 ~ 14975168 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other upstream 2232810 16560418 ~ 16564338 (-)
G53797 tpm1,LOC103462590 other upstream 2554285 16881893 ~ 16934252 (-)
serf2b NA other upstream 2718836 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 4338665 18666273 ~ 18669833 (-)

Expression


Co-expression Network