G27295


Basic Information

Item Value
gene id G27295
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4895552 ~ 4900837 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30824
ACATTACTTTCCGGTGTTGCATGAACGCAATAGAGTACCTCTCTATTGGTAGGCCAACCCGGAAGTTAGCGGCGCACGGGTTCCCTCGATCGAAAGCCTATGCATTTTTCCCCATAGACTTTTGGAAAATTGCAAAAAATAAGCTCTGTGTTTAACAAATCGTTATGACACTTACACGTTTTGTCTATCAAGATAATCTGTACAAGTTAACACAACATTTATACATTTTGAAGCCTAAATAAAGTCATCAGATATAAAAAGCTACCAGTAGGCTATAAACGGACTACATGCTACATACTAAATGCTGTCCAAATGTCCTGTTTGTCTTGATGACGTCTAAAGTCCCCACCAAAGGAAGTAGTCCCTTTTAGCAACCGCCATTTTTAAGACACAAAGCTTTTAAAAAAAAATAAAAATCACAATCGGGTTATAACTGGTGTGTTTTATGTCATAGATCAAAATGTGAAAATATTTAGAGGCTTTGTTAACCACAGACCTTATTTCAGGCGATTTAGCAAAAACCCATTCAAAAAACCCATTGACTTCGGGGCGATGGAACCGGAAGTCCTAAAATGCTAACTCGCTTCTGGGTTTTGCATACAAAAACACGTCATCTCAGAGGTACTCTATTGGCTATCGTCTGTGATCTGATTAGCTGACGCCTGCGTTGGTGTTTGAAAAGTTGAGAAATCTTCAACTTCCGCCGGGAGCAACACGTGTAAAGTGACGCGACAGAACCCACAATTCAGTTCGGCAACACATGACGTCACCCATTCAAAGTAAATGAGAAGCGTTAACGCCGACGCCCCGTGTGAATGCAGCGTAAGCCTTTTGACGGATTCATTAAAAGAACAGGCTCATATTAATCATTCATTAAGACTGTTTCAAAGAATGAAAAAGCCATGATTAAGAGTCTTTTTACTAACTCATTAAATAACTGATTCATTAAAAAACAGGCTGATACAAGTCATTGATTTGCAAACTCATTTAAACTAGTAGTCATGCTGTATGCTTGTTACTGTGCAATGAAGACATCACAATTAAAAGGGTGTAATTTTCTGTTGTTTTGCAGGATCTATCACATTCAATTCAAACTCCTATAAGATCATTACAAATCACACTGTATGACATGGATCTAATAAACTTGGGTACGACTAGACTGTACGATGATGACACCTCTTGAATCGGTGGCAAAATCGTACAGTGTGTACTGGGCATTAAAGCTACAATATGTACATTTTTCACCGCTAGAGGTCATCTATTCAAAACAAAGGCGCAGCTTGATGATGCCGAGATTGAGCGCGGACTCTTGGGAGATGTCGTCTTCACCTCACAGTCAGTGGAAAAAAAATCGGGACGAGACTCGGGGAGAAATCATATTCATGGATGCGATTATTAACGTTACTATAGTATGAAGCAGAGCAGGGTGAGTGATGTGAGAGCTGAACGAGGTGGCTGGAGTAATTGCTAATGAGAGACGAGCATGACACACACCTCGAGAGCAGTGGAGCTCTTATTATGCCGCAGTCTTCCAGTCAAGCGTATGAGATAACACAGCACTGTTTATCATATTAGATACATTTGACTGTGTTGAAAATGATGTTATAACGTTACTCTGTGCGTTTGCTTGGCAGCTGCTGTGAGACACTTGTTGCACACATTCTCTGAGGCATGGTAAAAGCATGGTACTCTGAAACTAGATTTAAACAATAAGACTAAACGTGTTGAGCTATATAATAATTCGTTTTCTGTCTATAAATGTAGCCAAAAAGTCGTTCCCTTGTCTAATGAAACGTAATATATTAAAGCGTCTTTGGTGTTTCCATGGTTTCTACAAAATAAAAACGGAAACCAGATATGACGCCATTGACAGGCGACTCTCGGCCATGTCCCTTATCCTTGGTTAAAATAGCAATTTTCTCATGATTTGCAAATAGTTGGAAACATTTGGGATATTGTAAGTACTCAACTGAACAAAATATATAACACTGACCTAGTGGTTTTTGGATATTTTACAGCAAAAATTTTACATATTGTGCCTTTAAGGCCGATTCACACCGTACAGACAAACGCCAACAAATACGTTTGTTGGGTTTTGTTGGATCATTGTGTTACCCCTGTCGGTGTCTGTTGGCGTTGGTTGGGGTTTGCTTACAGTAAACGTTCAGTCAGCTTTTGTTGCTATCTGTTGGGGCAGTGTGAACATGACAGTTATTTTTCATAAAATTCTAAATCCAACGGCCAACTTGTTTGTTGCCGTCTGTCTGTGTGGTGTGAATTGGCCTTTAAAGACAGGGTGCTCAATCCTGCTTGTGGAGATCTACCTTCCTCTACCAAAGTTCAGCTGCAACCCTGATTAAACACAACTGAACCAGCCCTGTGTCCGAAATCACCCCCGATACCCTTAAATAGGGCACTATTTGAGGGAACAGCCATTTTTAGTGGTGTCCGAAACCTTGGCGGACATTATCGAGTGCACTCACTCAATCCCACAACGCACCGCAATAATGAGTGTACAACTGACGTACGTTCAATGGCTAAAGAATACTCATTATGCACTGTAAAAGTCGCACAACGAATGAATTCCTGCATCTCACCAGAAGATGGCGCCCACAGCTGAATCATCCATCCACTCATTCATTTTACAAATGTCTCGTCTGCGCCATACAGCGTAATATAATACAGGTATAAATTAATTTTTAATTGATTATTAAATTGTTTATCTAAGGTTTATAATTTCCATGACAGAATTCAAGATAAATCATTTCATCTTACTACTGGAGCTGCCAGTTTGCCAAGTTTAAAATGATTATTAAACAGCAAGCACAAACTATGCAAAAGCGGTAGCCCTTCAGTTCACTCACTCGTTTTTAGTCACTCCTTCAAGTGAACTGTGATTATTGAACTAATGTCGGGAACAGTGAATGAGGGTATAGAAGGCGATTTTGGATTCAGCCCAGATCTTCAGGAGCACTTGATAATTATGGACAGGTGTGTTGAATCAAGGTTAGATCTGAACTCTGCAGGTAGGTAGATCTCCAGGAACAGGACTGGGCACCCGTGCTTAAAGAGAAATGCTGTCATCATTTACTCACCCTCGTGTCATTCCAAGCATGTTTGACTTTTTTCTGATTAACACAAAAGAAGATATTCAGAACAAATTTGGTAACAAACCATTTTGGTGCCCATTGACATCCATTATATGATTTTTTTAATTTTTTTTAATTAAAAGATCTTTTGTGTTAAGGGGGAAAAAAGTCATACAGGTTTGGAACATCATGAGGGTGAGTAAATGATGACAGAATTTTCCTTTTGGATGAACTGGCACTTTAACTTGTGTAAAGCATTATTTTGCCATGGTGCTGCATATGCTGCAGTGGCGCAGGAATCACTGATATACACAAAGGATGTGTGAGCGTACATGAGTGCTGCCGATACCCTCCAGCAGAAGTCTGGTGATCTCGGCCTGCCGGTCAAACTCACTCTGTGCTATCCTCAGTTCTGTCTCTGCCTGAGGGAAACACACACACACAAAAATCACATCACATATATCCCCACAAATAGGCTGAGAATCATATGAATGTCGAGGCTAAGCTGCTTTCTGTGCAAAGTAAATGTAACAGAGGCAGGTGGGAATATAAACAACTTTAGAGCTCCCTCTGCTGGACACAAGCAGTTCCTCATTCACGTGGCAGGGTGAGTTGATGTCAGATAGCACTAGCAAAGATAACAGGGCAGCTGTCTCTGTTTCTCTGGTAAAAGCTGCGTTTTCTTCAACAGGGTTCGGGGAGGAAAGACTGAAGCGCACTCACCTGCTGCACCTCCTCAGCCCACAGCTGGCCAGCATTCAGAAACAGTAACAAACTTGTCAGGTCAAGTAAACAGATCAACCCAAACCACACAAACTTATCAATCCTCACAATCAACAACTTTCATAACCGTCTGGAGCTGTTATGTAAGATAAGTTTAATTGTGTCACCATTCATGCACAGACACATTCACTAGGAGGAACCAAAACAGGGAGCTGTTCAGTTTCAATGATGAGTAACAATGGGAAAAAGATTGTCATAACAATATTAATGTATGAGCACATGCACAACACTGAAACACATTCACCTCATGGTGATATTGTGCAATTTTAATGCAAATCACACTGTTAGCTGAGATTACACAGACACAGATGACACAAATATTATCAATGGTCAGAAGAAAAACAAAACCACACCAAACACAGTAACTGCATTCTGTTGCCCTCAAAGTGAAATAAATGGCGTGTTAAGCACACAAATTAGGAGAGCATTTACCGGCTATAACGTTTTGAGTGAACACAAAAACACATGAAGTAGCACAGCTATTTCTGTTCAGTTAGACAGAAATACAAACATGTGTTTATCAAGATGTGTTTTTTTTCACAGAATGATTTTCTCCAAAGATGGTGGATTTTGTGAAGGGCAAGAGAGGGCAGATGTTTAATTAGACACAGCAGACAAACCTTTAGCCACCTGACATGCAAGAAGCTGAGCATGTAAGAAAAGTGAGCCACATACTCCTCTCCCAGCGGAGGGCTTGAGTTCAGCTCCTTCGGACGGAGGCAGGCAAGCAGACAGAGAGAGACATAATGAGAGAGAACTGGGGAAAATAAGAGAGGTTAGAGATCCAAAGACAGCAGCGGACACGCAAAAAGGGCATTTAACACAAGCATCACCTCTGTTAGTTACACTGCGCTAAGAGCATTAGAGAGCTGGCGGCTAACTTGGGGAAAGATGAAAAACAGCTTTCACTCTTCAAAACTCATCTCTTATTTGAACAAACTGTAAAATTGAATGTGGAACCTGGAAATGCCAGAAAAAAGCTGCTTATTATTACATTCTGTGTGTGTGTGTTTGCTTGTTTTCATGATTTATGAGGACACAAATTTGTATAATGACAAGGGTATTACACTGGTATTACGACGTAAACATGTTTTATGAGGACATTTCATGAGTCCTCATATTTAAAATAGCTTTAAAAACATACTAAACAATGTTTTATTAAAAATGTAAAAATGTAGAATGTTTTGTGTGATGGGTAGGTTTAGGAGTAGGGGTAGTGTAGGGGGATAGAATGTACAGTTTGTACAGTATAAAAACCATTACGCCTATGGAATGTCCTCACTAAGATAGCAAAACAAATCTGTGTGTGTGTGTATGTGTGTAAAATACTAACTGCAGAGCGAGCATCAGCCACTCTGGCCTTCTTCATTCTGTTTTTGGCTGCATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU30824 True 5260 lncRNA 0.40 2 4895552 4900837

Neighbor

gene id symbol gene type direction distance location
CI01000004_04798717_04889650 ARHGEF4 coding upstream 5902 4798717 ~ 4889650 (+)
CI01000004_04786239_04788953 NA coding upstream 106591 4786239 ~ 4788961 (+)
CI01000004_04754556_04784656 ATR coding upstream 110795 4754556 ~ 4784757 (+)
CI01000004_04690908_04706755 ATP1B3A coding upstream 188652 4690908 ~ 4706900 (+)
CI01000004_04535801_04536013 NA coding upstream 359043 4535258 ~ 4536509 (+)
CI01000004_04924543_04956339 VAV3B coding downstream 23671 4924508 ~ 4956435 (+)
CI01000004_05154049_05203177 COL11A1B, COL11A1 coding downstream 253212 5154049 ~ 5203177 (+)
CI01000004_05227614_05231253 OLFM3, OLFM3A, OLFM3B coding downstream 326777 5227614 ~ 5232052 (+)
CI01000004_05238552_05246750 TECRL2B coding downstream 336367 5237204 ~ 5247114 (+)
CI01000004_05343381_05353920 NA coding downstream 442544 5343381 ~ 5354231 (+)
G27305 NA non-coding upstream 139325 4755730 ~ 4756227 (+)
G27278 NA non-coding upstream 171922 4723420 ~ 4723630 (+)
G27271 NA non-coding upstream 199635 4694973 ~ 4695917 (+)
G27265 NA non-coding upstream 208630 4686708 ~ 4686922 (+)
G27254 NA non-coding upstream 219337 4650406 ~ 4676215 (+)
G27293 NA non-coding downstream 4322 4905159 ~ 4993021 (+)
G27148 NA non-coding downstream 90566 4991403 ~ 5116579 (+)
G27383 NA non-coding downstream 207425 5108262 ~ 5126498 (+)
G27388 NA non-coding downstream 232368 5133205 ~ 5133577 (+)
G27753 NA non-coding downstream 306011 5206848 ~ 5208660 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1343106 3550329 ~ 3553423 (+)
G26245 NA other upstream 1373159 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 2136614 2745885 ~ 2769135 (+)
G25992 NA other upstream 2158784 2736536 ~ 2736768 (+)
G25882 NA other upstream 2322503 2548075 ~ 2573049 (+)
G27805 NA other downstream 471988 5372825 ~ 5373803 (+)
G28165 NA other downstream 831752 5732589 ~ 5733001 (+)
G28302 NA other downstream 1569191 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1670383 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2753935 7654234 ~ 7656383 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G337021 NA non-coding NW_019172929.1 APWO02000036.1 1651186 ~ 1652769 (+)