G27254


Basic Information

Item Value
gene id G27254
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4650406 ~ 4676215 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30758
TTTTTTTTTTTTTTTTTTTATCAGATTTTTAAAATATTTTTATTGTTGAGACCCATTCATATTGTGGTACTTGGATTACGTTACTGAATACTTTTTTTATGAAGTAATTTGTAACTGTAACGGAATACATTTTTAAAGTAACCCTCCCAAGCCTCCATTTAAACATGATATCTGCTGTTTTACATTGTGAAAGAAAATAAAAAAAGCACAACATTTTAAACAAATGTTAAAAAAATAAGTATGTCTAGCTGACATTTAATCAGATTGTGTTATACAGAAAAGAGTAGCATATCAATTAGTTGCATTGTTGTAGAACATTTTGTAACAATATGTGCATACAATATCATCAAAATAATTTGAATAACTAAGCTTTCAAGGTCATTTTAATCAAAGACCTTTCCTTTCATACACTGGATATATAAATTGGAACAAATTTATTACTGAAATTTCAAATCAGTCCAAGACTTTTGCAATCAGGAGAAAGAGTTTACTCTCTTTAATGTGGTCAGGCAGGTTAGGTGATTGCTAATAATGACCCTTCAGCACTGGAACTTGAGAGATGTCCTTGTGGCTCTATCCGTCTAATGGCACATCAAAATGATGGGCTGGATAGTGGATTACTGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU30758 True 626 lncRNA 0.26 2 4650406 4676215

Neighbor

gene id symbol gene type direction distance location
CI01000004_04535801_04536013 NA coding upstream 113897 4535258 ~ 4536509 (+)
CI01000004_04498877_04532504 CLCN2, CLCN2A coding upstream 117320 4498877 ~ 4533086 (+)
CI01000004_04414110_04428551 CC2D1B coding upstream 221855 4414110 ~ 4428551 (+)
CI01000004_04412723_04413196 NA coding upstream 237210 4411601 ~ 4413196 (+)
CI01000004_04400735_04404462 ELOVL1A coding upstream 245620 4400422 ~ 4404786 (+)
CI01000004_04690908_04706755 ATP1B3A coding downstream 14693 4690908 ~ 4706900 (+)
CI01000004_04754556_04784656 ATR coding downstream 78341 4754556 ~ 4784757 (+)
CI01000004_04786239_04788953 NA coding downstream 110024 4786239 ~ 4788961 (+)
CI01000004_04798717_04889650 ARHGEF4 coding downstream 122502 4798717 ~ 4889650 (+)
CI01000004_04924543_04956339 VAV3B coding downstream 248293 4924508 ~ 4956435 (+)
G27176 NA non-coding upstream 61080 4585555 ~ 4589326 (+)
G27149 NA non-coding upstream 76244 4562157 ~ 4574162 (+)
G27159 NA non-coding upstream 213904 4436181 ~ 4436502 (+)
G27166 NA non-coding upstream 239101 4410444 ~ 4411305 (+)
G27146 NA non-coding upstream 294862 4355317 ~ 4355544 (+)
G27265 NA non-coding downstream 10493 4686708 ~ 4686922 (+)
G27271 NA non-coding downstream 18758 4694973 ~ 4695917 (+)
G27278 NA non-coding downstream 47205 4723420 ~ 4723630 (+)
G27305 NA non-coding downstream 79515 4755730 ~ 4756227 (+)
G27295 NA non-coding downstream 219337 4895552 ~ 4900837 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 1097960 3550329 ~ 3553423 (+)
G26245 NA other upstream 1128013 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 1891468 2745885 ~ 2769135 (+)
G25992 NA other upstream 1913638 2736536 ~ 2736768 (+)
G25882 NA other upstream 2077357 2548075 ~ 2573049 (+)
G27805 NA other downstream 696610 5372825 ~ 5373803 (+)
G28165 NA other downstream 1056374 5732589 ~ 5733001 (+)
G28302 NA other downstream 1793813 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 1895005 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 2978557 7654234 ~ 7656383 (+)

Expression


Co-expression Network