Gene
RNA
| Item | Value |
|---|---|
| gene id | G27176 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 4585555 ~ 4589326 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU30675 | True | 1195 | lncRNA | 0.40 | 2 | 4585555 | 4589326 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_04535801_04536013 | NA | coding | upstream | 49046 | 4535258 ~ 4536509 (+) |
| CI01000004_04498877_04532504 | CLCN2, CLCN2A | coding | upstream | 52469 | 4498877 ~ 4533086 (+) |
| CI01000004_04414110_04428551 | CC2D1B | coding | upstream | 157004 | 4414110 ~ 4428551 (+) |
| CI01000004_04412723_04413196 | NA | coding | upstream | 172359 | 4411601 ~ 4413196 (+) |
| CI01000004_04400735_04404462 | ELOVL1A | coding | upstream | 180769 | 4400422 ~ 4404786 (+) |
| CI01000004_04690908_04706755 | ATP1B3A | coding | downstream | 101582 | 4690908 ~ 4706900 (+) |
| CI01000004_04754556_04784656 | ATR | coding | downstream | 165230 | 4754556 ~ 4784757 (+) |
| CI01000004_04786239_04788953 | NA | coding | downstream | 196913 | 4786239 ~ 4788961 (+) |
| CI01000004_04798717_04889650 | ARHGEF4 | coding | downstream | 209391 | 4798717 ~ 4889650 (+) |
| CI01000004_04924543_04956339 | VAV3B | coding | downstream | 335182 | 4924508 ~ 4956435 (+) |
| G27149 | NA | non-coding | upstream | 11393 | 4562157 ~ 4574162 (+) |
| G27159 | NA | non-coding | upstream | 149053 | 4436181 ~ 4436502 (+) |
| G27166 | NA | non-coding | upstream | 174250 | 4410444 ~ 4411305 (+) |
| G27146 | NA | non-coding | upstream | 230011 | 4355317 ~ 4355544 (+) |
| G27138 | NA | non-coding | upstream | 250225 | 4335045 ~ 4335330 (+) |
| G27254 | NA | non-coding | downstream | 61080 | 4650406 ~ 4676215 (+) |
| G27183 | NA | non-coding | downstream | 70021 | 4659347 ~ 4661137 (+) |
| G27265 | NA | non-coding | downstream | 97382 | 4686708 ~ 4686922 (+) |
| G27271 | NA | non-coding | downstream | 105647 | 4694973 ~ 4695917 (+) |
| G27278 | NA | non-coding | downstream | 134094 | 4723420 ~ 4723630 (+) |
| CI01000004_03550525_03552621 | PTGER4C | other | upstream | 1033109 | 3550329 ~ 3553423 (+) |
| G26245 | NA | other | upstream | 1063162 | 3509017 ~ 3522393 (+) |
| CI01000004_02745885_02768971 | NA | other | upstream | 1826617 | 2745885 ~ 2769135 (+) |
| G25992 | NA | other | upstream | 1848787 | 2736536 ~ 2736768 (+) |
| G25882 | NA | other | upstream | 2012506 | 2548075 ~ 2573049 (+) |
| G27805 | NA | other | downstream | 783499 | 5372825 ~ 5373803 (+) |
| G28165 | NA | other | downstream | 1143263 | 5732589 ~ 5733001 (+) |
| G28302 | NA | other | downstream | 1880702 | 6470028 ~ 6502087 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | downstream | 1981894 | 6570771 ~ 6572667 (+) |
| CI01000004_07654234_07655677 | MRPL34 | other | downstream | 3065446 | 7654234 ~ 7656383 (+) |
