G31759


Basic Information

Item Value
gene id G31759
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12018548 ~ 12021668 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU36000
TGAATTTCAACCACATTTTCATTTATTTCTGTCTCCAAAGAAAAAGAAAAAAAAAAGCCTGGAATGGACATTATTACACAATGACGTGCTGGAGTAGACACTGTTAGGAGAGATGAATAATCCTGAACTCTGTTAGGCAAAAGGATGTGGGTTTTGAATGAATTATTTTGTACGTTGTAAAGTGGTGAGAGTACAGTGTTTCCAGTTTCAAAGGAGCCCTGCCTGTAAGAGCTGTCAGGCATTCACAGTTCATTTGATTAAAATAGCTTTATTCAGTTCAAAGGAGTCATGTTAATAAAAATCACAGTAAATTGTGTCATTAAAAAAAGCGAAATGTCAACCGGAGGAAACATGGGAAGGGATTGAACTAAGCTCATCGTTGTTGGACGGCCAACACAACAAAGAAGCGTGTTTGAAATCTAAAGGCCACACATGACAAAGTCTAACAGTAAAAGATTTGTAAAAAAACAAAAACAACAAAACTACAACAGTAAAATTAGACTGATAACAGTAGCTGCCACAAAATACATGGCTATTCTCATTGTATTACTGAAACTGCTGAAGCGTCTCATCCAATGTATTTGAGATGTAATACTTTTGGCAGACACAGTCAAGCTTGTAACATGTTTTTGATTTGCTTGGAGGTAGTCTCATCATTCAAATGTTTTGTTGTGTACCTGTGAGTCAAGAGAGAACACCGAAAATCATTGCACACACCACATGGTTTTCAGCAGAAACAAAGTCTCATATGGATGTTTATCAACAATTATGTAAGGTATAAAGCTGTAAGAGTTTTTTTAAGATAAAGCTCACAGACCTGAGGGCATTGAGAAGTCCCTCCACACTGTTGGGCGGCTGATATCGCAGAACCTTAATGCATCCTTTCATCTGTTTCATAAAAAGACAATAACATGATGTATTTGTATATAGTTTGCTTTTAATTAGGGTGGTCTATTTAGCACATTAGTTTAGTAATTTAGTTGGTAACACTTTACAATAAGGTTTCATTTGTTTCAAGTCTAGGTTAACTAATATTTGACTGAACAATACTTCTACAGCATTTATTAATCTTAGTTAATGTTAATTTCAACATTTACTAATACATTAACTAATGTTAACAAATACAACTTTTGAACTAACATGAACCAACAATGAACAGAAGCTAATGTTAACAAAGATTAATAAATACAGTAACAAATGTATTGCTCATTGTTAGTTCATGTTAGTTAATACATTAATTAATGTTAACAAATGAGACCTTTTTGTAAAGTGTTACTATTTAGTTTAATATGTTGCATTTAATCAGTAATTACTGATATAAATGCTTACTTGGTGATCAAATGCATGCATTTTAACATGTTTTTTAACATTGTGTGTTAAATTGACAGCCCTAATTAAACTCTTTACAAAAGTAAAATCAGATTTTAAAAATTTGACTTAATTTAACTTAATTTCATTATGCTGATTAATTTATTAACACATTTAAAGGGATAGTTCACACACAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU36000 True 1510 lncRNA 0.39 2 12018548 12021668

Neighbor

gene id symbol gene type direction distance location
CI01000004_11897082_11898506 MYCB coding upstream 119333 11896232 ~ 11899215 (+)
CI01000004_11863724_11890961 NA coding upstream 127434 11863724 ~ 11891114 (+)
CI01000004_11776595_11786233 STARD3NL coding upstream 231631 11776419 ~ 11786917 (+)
CI01000004_11771176_11773391 EPDR1 coding upstream 245032 11771089 ~ 11773516 (+)
CI01000004_11750356_11765031 RANBP9 coding upstream 252444 11749765 ~ 11766104 (+)
CI01000004_12033980_12034384 NA coding downstream 11988 12033656 ~ 12034402 (+)
CI01000004_12222833_12223126 NA coding downstream 200258 12221926 ~ 12223244 (+)
CI01000004_12331486_12332789 NA coding downstream 309172 12330840 ~ 12332997 (+)
CI01000004_12353073_12362622 KLHL18 coding downstream 331292 12352960 ~ 12362716 (+)
CI01000004_12362858_12363136 NA coding downstream 341139 12362807 ~ 12363136 (+)
G31773 NA non-coding upstream 17837 11994896 ~ 12000711 (+)
G31769 NA non-coding upstream 63634 11953371 ~ 11954914 (+)
G31778 NA non-coding upstream 67191 11950993 ~ 11951357 (+)
G31762 NA non-coding upstream 84102 11932387 ~ 11934446 (+)
G31764 NA non-coding upstream 86353 11931359 ~ 11932195 (+)
G31777 NA non-coding downstream 9463 12031131 ~ 12033537 (+)
G31763 NA non-coding downstream 29157 12050825 ~ 12051571 (+)
G31852 NA non-coding downstream 137697 12159365 ~ 12159616 (+)
G31854 NA non-coding downstream 140690 12162358 ~ 12162817 (+)
G31805 NA non-coding downstream 148653 12170321 ~ 12170649 (+)
CI01000004_11666900_11667179 NA other upstream 350889 11666900 ~ 11667659 (+)
G31710 NA other upstream 376148 11637251 ~ 11642400 (+)
G30797 NA other upstream 1520760 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3037564 8976254 ~ 8980984 (+)
G28859 NA other upstream 3418945 8599235 ~ 8599603 (+)
G31865 NA other downstream 170462 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 621086 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2001879 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3069576 15091200 ~ 15097173 (+)
G34220 NA other downstream 3917689 15939357 ~ 15939950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G69722 NA non-coding NC_047598.1 CM018544.1 23758384 ~ 23774271 (+)
bowfin (Amia calva) AMCG00019697 fam49b,fam49bb,LOC107748306,LOC107691432 coding CM030124.1 CM030124.1 37793089 ~ 37808217 (+)