XLOC_000707 (rln3b)


Basic Information

Item Value
gene id XLOC_000707
gene name rln3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54115839 ~ 54118052 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001183
CGCGAAGGATCACTTCAAAGTAGTTTTTAGTGCCTGAAACGTCTCGTCGTCCTGATGTGTAGAGTTGCAGTACTCGTGTTTGGCCTGCTGGTTGCGCTGCTGGGCGGCGCTCAGGCCACAGATGGACACTCGATCTACGGCGTGAAGCTCTGCGGGAGAGAGTTCATCCGGGCGGTGATCTTCACCTGCGGAGGCTCGCGCTGGAGGAGATCTCTGGATGATTCAGGTGATCTGTCCAGTGATCTGCTCTCCGCTCATGATGACGAGGCCTCTGAAAGATGGGCCTTAAACTCAGTCATCCCTGGACTATCATACAGACCCCGTCCCAACTCGGAGACCCCTAGCTGGGCAGCAGAGGCTTCGGAGGGCCCTGTGTTCAGCCGTACCGCCCGGTCGGTCATCTCAGAGGAAGTGCTGGAGGCCCTGCGCACGTCAGACAGGAAAGGCCGTGATGTCGTGGTCGGCCTGTCCAACGCCTGCTGCAAATGGGGCTGCAGCAAGAGCGAGATCAGCTCATTATGTTAAAAGAGAATCCTGCGAATCCAGAGAGCCTGTGGGTTAATAAGAGGAGCCCTTATTATGTGACATTACAGGAAAAATGGCAAGCTTTTAATGTCTTGTAAAAGCCTCTCTGATTGTGCAGGAACATTCTGTTAGGTGATTGGATTGGGGTTTTGGATGGGAAAACTGGATGTAAAATGTTTGCTGTGCTTACAAGATTGGTATATACTGCGTAACCTGTAGTAATATGcaatctcaaaaataaaaaatatattgtttaaaaaaacagaagGAATGTGCAATGCAAATTCTTCAGCGTTTTTTATCTTTCTGTTTAAAGGTTGTTCCTGTGAAATAGTGAAAATGTACACCTGGAATATACAGGAAAAGCCG

Function

symbol description
rln3b Predicted to enable G protein-coupled receptor binding activity. Predicted to be located in extracellular region. Is expressed in several structures, including female organism; heart; male organism; nervous system; and pleuroperitoneal region. Orthologous to human RLN3 (relaxin 3).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090527-3 Predicted to enable G protein-coupled receptor binding activity. Predicted to be located in extracellular region. Is expressed in several structures, including female organism; heart; male organism; nervous system; and pleuroperitoneal region. Orthologous to human RLN3 (relaxin 3).

Ensembl:

ensembl_id ENSDARG00000116898

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001183 True 894 mRNA 0.49 2 54115839 54118052

Neighbor

gene id symbol gene type direction distance location
XLOC_000706 dcaf15 coding upstream 31174 54069450 ~ 54084665 (+)
XLOC_000705 triobpa coding upstream 53727 54037077 ~ 54062112 (+)
XLOC_000704 dla coding upstream 89487 54013457 ~ 54026352 (+)
XLOC_000703 NA coding upstream 127063 53982614 ~ 53988776 (+)
XLOC_000702 ccsapa coding upstream 151906 53954230 ~ 53963933 (+)
XLOC_000708 LO017722.1 coding downstream 6157 54124209 ~ 54126428 (+)
XLOC_000709 TNPO2 coding downstream 19037 54137089 ~ 54146461 (+)
XLOC_000710 CABZ01067150.1 coding downstream 67987 54186039 ~ 54186156 (+)
XLOC_000711 CABZ01067150.2 coding downstream 76749 54194801 ~ 54274861 (+)
XLOC_000712 NA coding downstream 159191 54277243 ~ 54469289 (+)
XLOC_000699 NA non-coding upstream 250002 53864528 ~ 53865837 (+)
XLOC_000697 NA non-coding upstream 345100 53760797 ~ 53770739 (+)
XLOC_000695 NA non-coding upstream 420284 53688977 ~ 53695555 (+)
XLOC_000694 NA non-coding upstream 457550 53656231 ~ 53658289 (+)
XLOC_000713 NA non-coding downstream 283881 54401933 ~ 54404147 (+)
XLOC_000715 NA non-coding downstream 493786 54611838 ~ 54613479 (+)
XLOC_000721 NA non-coding downstream 580121 54698173 ~ 54700755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000302_01182175_01186044 NA coding CI01000302 null 1182175 ~ 1186294 (+)
rainbow trout (Oncorhynchus mykiss) G1421672 LOC106600268 non-coding NC_048581.1 CM023235.2 12644738 ~ 12645648 (-)