XLOC_000706 (dcaf15)


Basic Information

Item Value
gene id XLOC_000706
gene name dcaf15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54069450 ~ 54084665 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001181
CTGGCAAAAATCAAAAATGGCGCCCAGCTCGAAATCTGAGAAAgatgacaacaaacaaaaacagccgAAAAAACACAAAGAGCACATCATTAAACTGCTGACGCGCGGACGGctGAATGGCCAGCTCTCTCAGCGACTCTTCCGGAAACTTCCTCCACGTGTTTGTGTTCCACTGAAGACCATCGTCAGTGAGGAGTTTCTCAGAGCCGgGCACATCTTCTTGGGCTTCACTAAGTGTGGCCGGTATGTTCTGTCCTACACCAGCGACTGCGGAGAGGACGATGACTTCTCCTTCTACACCTATCACTTGTACTGGTGGGAGTTTAACCTGCACAGCCGCCTCAAACAGgTTCATCATGTGCGTTTATTTGCTGGTGAGGATATCTACAGTGATCTCTATCTGACCGTGTGTGAGTGGCACAATGACCACTCCAAACTGGTCATCTTCGGCTTTAACACACGCAGCTCCAGTTCAGCCCTGATGAACATGATGATGAGTGACGAGAACAACAGAGACATTTACATCACCATCACTTCCATGCCTCCCGCTCAGCCGTGTAAACAGTGCTGTCCCGTGGCCTCCAGCTCCACCATACGCACAGGTGGAGAGTGTTTGGAGCACGGTTATGTGCTGAACGCTCGATATCAAGTGGTTTATCCGTTCCCAACGTTCCAGCCGGCGCTGCAGCTGAAGAAGGACCAGGTGATCCTGCTCAACACCAGCTACTCTCTGGTGGCCTGCGCCATCTCACTTTGCACAGGAGACGGCCAGCAGGAGAGTCAAAACAATCAGATACTGTACAGAAAGAGAGAACCTTCCTCTTCTTCCACTTCTGCTCCTGCTGGTCCCACATCTCCATTCTCATCCTCATCAGCCTCGTCTCAGGGCTCACCTGACCTCCGACACTCAAAGCCTCACGTGACCCCGCTCTCCCCTAGCCAATCACAGGCTGCCGTTTGGGCCAGAGAGTTTGCTGCTGACATCTTCCGCAGAGCTCAGGCTGGAGCGAGGGAAGCCGAGCGCTGCAAAACCAAAGAGAAAGAAGAAACAGACACTCAGAGACGACTCCATGATGAAGAGCGCACGAGAGAAAGTCCCAGAGAAGTCCCGGGACCTTCGTCTTCCTCATCAGAACCAAACCAGAGCTCAGTGGTTGAAAGCGGTGTGTGTAATGCAATCGTGTCTCCTAGATCCACGTCTTCAGTCTCATCTCCGTCTCCACACGAACAGGAGCCCTCATCATCCTCGTCATCCTCAGAGCCTGCTTATGTCAACTATACCACGCTCCGATACAGACTCCCACAGGCCACCTCAGTGGAGCAGTCCAACGGTGAGGAGGATGATAAAGTCCAGCTTCCTTTTACTGTGACCGATCTGAAGGGACGACCTTTACAGATAGTGACAGGACAGTACAGTGGTCAGTTTGTGTGTATCGAGCAGCTGACTCTGGATTTCGAGTATCTGATAAACGAGGTGATCAGGAATGACGCTGAATGGGGATCTCAGTTCTGCTCCTTCAGTGATTATGACGTGGTCATTCTTGAGGTTTGCCCGGAGACCAATATAGTGGTGATCAACATCGGGCTGCTGCTGCTGGCCTTCTCTAACTGTGATGACGAGcactgcaggcCCAAGTCGTATCACTCCAGTCTGCAGGTCAGTTGGGATTTAAACACAGGCGCGTGTCACACAGTTGGGGTCGGCGACCTCACTGAGGTCAAAGGTCAGACCAGtggaAGTGTGTGGAGCTCCTACAGGAAGTCGTGTGTGAATACTGTGATGCGGTGGCTCGTGCCGGAGAGCAGCTCACGCTACATCAACCGCATGACCAATGAGGCGCTGCATAAAGGCTCTTCTCTTCAGGTGTTGACTGATAATGACAGAGGCACGTGGATCGTCCTGTGATTTCATCGCAAGGTATTCTGGGAGCTGCAGGTAAACACGTTTGGGCCAAACTGACGCATGGTGCTCCGTCCCACTCTGGACACTCGGGGATAATGATGTCATCATTAAACACATGATGTCATCAGACGCATCAGTCTCCGTTAAACATGCACTCTTTACTTTTACACACTCGTTTTGATGTTGCGTTCTCAACGTTTTGTGATCAAATGCCCCAACGCTGGAAAGGGCAGCaggagatgttttttttaaggggggTCTCGTTTTTATGTTGGTTTGTTTGCTTGATTAATTTTAGGATGTTTGTTTACACTCGTCTCATCAGCCAATAAGAAACTGTCGATATCTCCcgccccttttttttttaattattactggTCGTGGCCTCGCAAGCTGGACTGGAT
>TCONS_00001182
ATGGCGCCCAGCTCGAAATCTGAGAAAgatgacaacaaacaaaaacagccgAAAAAACACAAAGAGCACATCATTAAACTGCTGACGCGCGGACGGctGAATGGCCAGCTCTCTCAGCGACTCTTCCGGAAACTTCCTCCACGTGTTTGTGTTCCACTGAAGACCATCGTCAGTGAGGAGTTTCTCAGAGCCGgGCACATCTTCTTGGGCTTCACTAAGTGTGGCCGGTATGTTCTGTCCTACACCAGCGACTGCGGAGAGGACGATGACTTCTCCTTCTACACCTATCACTTGTACTGGTGGGAGTTTAACCTGCACAGCCGCCTCAAACAGgTTCATCATGTGCGTTTATTTGCTGGTGAGGATATCTACAGTGATCTCTATCTGACCGTGTGTGAGTGGCACAATGACCACTCCAAACTGGTCATCTTCGGCTTTAACACACGCAGCTCCAGTTCAGCCCTGATGAACATGATGATGAGTGACGAGAACAACAGAGACATTTACATCACCATCACTTCCATGCCTCCCGCTCAGCCGTGTAAACAGTGCTGTCCCGTGGCCTCCAGCTCCACCATACAGTGTTTGGAGCACGGTTATGTGCTGAACGCTCGATATCAAGTGGTTTATCCGTTCCCAACGTTCCAGCCGGCGCTGCAGCTGAAGAAGGACCAGGTGATCCTGCTCAACACCAGCTACTCTCTGGTGGCCTGCGCCATCTCACTTTGCACAGGTACTAGTCAAAACAATCAGATACTGTACAGAAAGAGAGAACCTTCCTCTTCTTCCACTTCTGCTCCTGCTGGTCCCACATCTCCATTCTCATCCTCATCAGCCTCGTCTCAGGGCTCACCTGACCTCCGACACTCAAAGCCTCACGTGACCCCGCTCTCCCCTAGCCAATCACAGGCTGCCGTTTGGGCCAGAGAGTTTGCTGCTGACATCTTCCGCAGAGCTCAGGCTGGACGCACGAGAGAAAGTCCCAGAGAAGTCCCGGGACCTTCGTCTTCCTCATCAGAACCAAACCAGAGCTCAGTGGTTGAAATCTCATCTCCGTCTCCACACGAACAGGAGCCCTCATCATCCTCGTCATCCTCAGAGCCTGCTTATGTCAACTATACCACGCTCCGATACAGACTCCCACAGGCCACCTCAGTGGAGCAGTCCAACGGTGAGGAGGATGATAAAGTCCAGCTTCCTTTTACTGTGACCGATCTGAAGGGACGACCTTTACAGATAGTGACAGGACAGTACAGTGGTCAGGTGTGTCAGCTGACTCTGGATTTCGAGTATCTGATAAACGAGGTGATCAGGAATGACGCTGAATGGGGATCTCAGTTCTGCTCCTTCAGTGATTATGACGTGGTCATTCTTGAGGTTTGCCCGGAGACCAATATAGTGGTGATCAACATCGGGCTGCTGCTGCTGGCCTTCTCTAACTGTGATGACGAGcactgcaggcCCAAGTCGTATCACTCCAGTCTGCAGGTCAGTTGGGATTTAAACACAGGCGCGTGTCACACAGTTGGGGTCGGCGACCTCACTGAGGTCAAAGGTCAGACCAGtggaAGTGTGTGGAGCTCCTACAGGAAGTCGTGTGTGAATACTGTGATGCGGTGGCTCGTGCCGGAGAGCAGCTCACGCTACATCAACCGCATGACCAATGAGGCGCTGCATAAAGGCTCTTCTCTTCAGGTGTTGACTGATAATGACAGAGGCACGTGGATCGTCCTGTGA

Function

symbol description
dcaf15 Predicted to be involved in protein ubiquitination. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF15 (DDB1 and CUL4 associated factor 15).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-2374 Predicted to be involved in protein ubiquitination. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF15 (DDB1 and CUL4 associated factor 15).

Ensembl:

ensembl_id ENSDARG00000077790

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001181 False 2307 mRNA 0.51 13 54069450 54084665
TCONS_00001182 True 1737 mRNA 0.52 15 54069466 54084264

Neighbor

gene id symbol gene type direction distance location
XLOC_000705 triobpa coding upstream 7338 54037077 ~ 54062112 (+)
XLOC_000704 dla coding upstream 43098 54013457 ~ 54026352 (+)
XLOC_000703 NA coding upstream 80674 53982614 ~ 53988776 (+)
XLOC_000702 ccsapa coding upstream 105517 53954230 ~ 53963933 (+)
XLOC_000701 acta1a coding upstream 115918 53945934 ~ 53953532 (+)
XLOC_000707 rln3b coding downstream 31174 54115839 ~ 54118052 (+)
XLOC_000708 LO017722.1 coding downstream 39544 54124209 ~ 54126428 (+)
XLOC_000709 TNPO2 coding downstream 52424 54137089 ~ 54146461 (+)
XLOC_000710 CABZ01067150.1 coding downstream 101374 54186039 ~ 54186156 (+)
XLOC_000711 CABZ01067150.2 coding downstream 110136 54194801 ~ 54274861 (+)
XLOC_000699 NA non-coding upstream 203613 53864528 ~ 53865837 (+)
XLOC_000697 NA non-coding upstream 298711 53760797 ~ 53770739 (+)
XLOC_000695 NA non-coding upstream 373895 53688977 ~ 53695555 (+)
XLOC_000694 NA non-coding upstream 411161 53656231 ~ 53658289 (+)
XLOC_000712 NA non-coding downstream 192578 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding downstream 317268 54401933 ~ 54404147 (+)
XLOC_000715 NA non-coding downstream 527173 54611838 ~ 54613479 (+)
XLOC_000721 NA non-coding downstream 613508 54698173 ~ 54700755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008409 NA coding CM030126.1 CM030126.1 630060 ~ 640373 (-)