RNA id: TCONS_00001181


Basic Information

Item Value
RNA id TCONS_00001181
length 2307
RNA type mRNA
GC content 0.51
exon number 13
gene id XLOC_000706
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54069450 ~ 54084665 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGCAAAAATCAAAAATGGCGCCCAGCTCGAAATCTGAGAAAgatgacaacaaacaaaaacagccgAAAAAACACAAAGAGCACATCATTAAACTGCTGACGCGCGGACGGctGAATGGCCAGCTCTCTCAGCGACTCTTCCGGAAACTTCCTCCACGTGTTTGTGTTCCACTGAAGACCATCGTCAGTGAGGAGTTTCTCAGAGCCGgGCACATCTTCTTGGGCTTCACTAAGTGTGGCCGGTATGTTCTGTCCTACACCAGCGACTGCGGAGAGGACGATGACTTCTCCTTCTACACCTATCACTTGTACTGGTGGGAGTTTAACCTGCACAGCCGCCTCAAACAGgTTCATCATGTGCGTTTATTTGCTGGTGAGGATATCTACAGTGATCTCTATCTGACCGTGTGTGAGTGGCACAATGACCACTCCAAACTGGTCATCTTCGGCTTTAACACACGCAGCTCCAGTTCAGCCCTGATGAACATGATGATGAGTGACGAGAACAACAGAGACATTTACATCACCATCACTTCCATGCCTCCCGCTCAGCCGTGTAAACAGTGCTGTCCCGTGGCCTCCAGCTCCACCATACGCACAGGTGGAGAGTGTTTGGAGCACGGTTATGTGCTGAACGCTCGATATCAAGTGGTTTATCCGTTCCCAACGTTCCAGCCGGCGCTGCAGCTGAAGAAGGACCAGGTGATCCTGCTCAACACCAGCTACTCTCTGGTGGCCTGCGCCATCTCACTTTGCACAGGAGACGGCCAGCAGGAGAGTCAAAACAATCAGATACTGTACAGAAAGAGAGAACCTTCCTCTTCTTCCACTTCTGCTCCTGCTGGTCCCACATCTCCATTCTCATCCTCATCAGCCTCGTCTCAGGGCTCACCTGACCTCCGACACTCAAAGCCTCACGTGACCCCGCTCTCCCCTAGCCAATCACAGGCTGCCGTTTGGGCCAGAGAGTTTGCTGCTGACATCTTCCGCAGAGCTCAGGCTGGAGCGAGGGAAGCCGAGCGCTGCAAAACCAAAGAGAAAGAAGAAACAGACACTCAGAGACGACTCCATGATGAAGAGCGCACGAGAGAAAGTCCCAGAGAAGTCCCGGGACCTTCGTCTTCCTCATCAGAACCAAACCAGAGCTCAGTGGTTGAAAGCGGTGTGTGTAATGCAATCGTGTCTCCTAGATCCACGTCTTCAGTCTCATCTCCGTCTCCACACGAACAGGAGCCCTCATCATCCTCGTCATCCTCAGAGCCTGCTTATGTCAACTATACCACGCTCCGATACAGACTCCCACAGGCCACCTCAGTGGAGCAGTCCAACGGTGAGGAGGATGATAAAGTCCAGCTTCCTTTTACTGTGACCGATCTGAAGGGACGACCTTTACAGATAGTGACAGGACAGTACAGTGGTCAGTTTGTGTGTATCGAGCAGCTGACTCTGGATTTCGAGTATCTGATAAACGAGGTGATCAGGAATGACGCTGAATGGGGATCTCAGTTCTGCTCCTTCAGTGATTATGACGTGGTCATTCTTGAGGTTTGCCCGGAGACCAATATAGTGGTGATCAACATCGGGCTGCTGCTGCTGGCCTTCTCTAACTGTGATGACGAGcactgcaggcCCAAGTCGTATCACTCCAGTCTGCAGGTCAGTTGGGATTTAAACACAGGCGCGTGTCACACAGTTGGGGTCGGCGACCTCACTGAGGTCAAAGGTCAGACCAGtggaAGTGTGTGGAGCTCCTACAGGAAGTCGTGTGTGAATACTGTGATGCGGTGGCTCGTGCCGGAGAGCAGCTCACGCTACATCAACCGCATGACCAATGAGGCGCTGCATAAAGGCTCTTCTCTTCAGGTGTTGACTGATAATGACAGAGGCACGTGGATCGTCCTGTGATTTCATCGCAAGGTATTCTGGGAGCTGCAGGTAAACACGTTTGGGCCAAACTGACGCATGGTGCTCCGTCCCACTCTGGACACTCGGGGATAATGATGTCATCATTAAACACATGATGTCATCAGACGCATCAGTCTCCGTTAAACATGCACTCTTTACTTTTACACACTCGTTTTGATGTTGCGTTCTCAACGTTTTGTGATCAAATGCCCCAACGCTGGAAAGGGCAGCaggagatgttttttttaaggggggTCTCGTTTTTATGTTGGTTTGTTTGCTTGATTAATTTTAGGATGTTTGTTTACACTCGTCTCATCAGCCAATAAGAAACTGTCGATATCTCCcgccccttttttttttaattattactggTCGTGGCCTCGCAAGCTGGACTGGAT

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-2374 Predicted to be involved in protein ubiquitination. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF15 (DDB1 and CUL4 associated factor 15).

Ensembl:

ensembl_id ENSDART00000108601

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003176 lncRNA upstream 80674 53982614 ~ 53988776 (+) True XLOC_000703
TCONS_00001173 lncRNA upstream 120942 53946000 ~ 53948508 (+) True XLOC_000701
TCONS_00003175 lncRNA upstream 203613 53864528 ~ 53865837 (+) True XLOC_000699
TCONS_00002881 lncRNA upstream 298711 53765375 ~ 53770739 (+) True XLOC_000697
TCONS_00003174 lncRNA upstream 299703 53760848 ~ 53769747 (+) False XLOC_000697
TCONS_00003177 lncRNA downstream 192578 54277243 ~ 54469289 (+) True XLOC_000712
TCONS_00003178 lncRNA downstream 317268 54401933 ~ 54404147 (+) True XLOC_000713
TCONS_00003179 lncRNA downstream 527173 54611838 ~ 54613479 (+) True XLOC_000715
TCONS_00003180 lncRNA downstream 613508 54698173 ~ 54700755 (+) False XLOC_000721
TCONS_00003181 lncRNA downstream 613518 54698183 ~ 54700755 (+) False XLOC_000721
TCONS_00001178 mRNA upstream 7338 54037077 ~ 54062112 (+) False XLOC_000705
TCONS_00001179 mRNA upstream 7338 54043563 ~ 54062112 (+) False XLOC_000705
TCONS_00001177 mRNA upstream 43098 54013465 ~ 54026352 (+) True XLOC_000704
TCONS_00001176 mRNA upstream 43270 54013457 ~ 54026180 (+) False XLOC_000704
TCONS_00001174 mRNA upstream 105517 53954230 ~ 53963933 (+) False XLOC_000702
TCONS_00001183 mRNA downstream 31174 54115839 ~ 54118052 (+) True XLOC_000707
TCONS_00001184 mRNA downstream 39544 54124209 ~ 54126428 (+) True XLOC_000708
TCONS_00001185 mRNA downstream 52424 54137089 ~ 54146461 (+) True XLOC_000709
TCONS_00001187 mRNA downstream 110136 54194801 ~ 54199090 (+) False XLOC_000711
TCONS_00001188 mRNA downstream 114228 54198893 ~ 54274861 (+) False XLOC_000711
TCONS_00001180 other upstream 8240 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 681569 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 701416 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 1008253 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001126 other upstream 1933948 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001186 other downstream 101374 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001221 other downstream 1043800 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 1208960 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 3263233 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 4075486 58160151 ~ 58173589 (+) True XLOC_000837

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000302_01151631_01162138.mRNA True 2496 mRNA 0.52 12 CI01000302 1151631 ~ 1162493 (+)