RNA id: TCONS_00003177


Basic Information

Item Value
RNA id TCONS_00003177
length 1832
lncRNA type read_through
GC content 0.40
exon number 2
gene id XLOC_000712
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54277243 ~ 54469289 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGTTGTGATTAGAAAGACAAATGAGAAGAttgttttttgagatctcagatttgAAGCTTtgttatttacattacatttgatttatttattgattgaactGTTTTAAAGCATTGAAAAGCTTCATTTCTCCTATCACCAGAAATTAGGTCTGTACTGCAGGTTTAGACAGCATTTTAGTCGCATGGCCAACTTTTtgtgtcaataaaaacaaaagcgAGATCAGTATGTTCTGAGGAAGCGCAAACTCTCAGCTGTCAAGACTCTTTATTTGACTTTGTCAAGTGCAAAAGCATGTAAAGCGAAGTGCTACAACGTTACAAGTACAACAGCTCAATACTGCACAACCCGCAATCAACACCTTCAGCATTTAATACAAAACAAAGGAAGGCTTTTACATCATTGCATGCAAGCTGCTTTTTACTGACACAAAGTATGAACTATTTCAGCTATCCTGCAAAGATAAGCTACTAATAAGCTATTAGTTTCAAATGAGTGCCGGTGCAGTGTGTAGCTCTGTTGAAAATgataccaaaaataaaataacagcgATGCtttcattgttattttggggtggTTTTGCTTGCTTTGGCATGGAGAAATGAACTGCAAAGCGTTGGTGTGTAACAAATGACAACAAAACAGAGATTTCAGCTCAGTGCGATTACGGCAAATGAGATTAAAACAAATGCGATCAAAACTCCTAACATAATATTTACATCAGGGCACACCGATATGTACAGATAAACATGACCTTTCAAATGCGGAATGGCTTGAGTAAAGACGTTATTATAGTCGACGTGACCTTTGATGATCAAAACTGATCTCCGTCTCTGTAGACGTCGGAGCATTTACACATTTCAGCGTCCAATCACGTGTGCTCTGCTTTGATCATGTGAGGCCTTATTAAttgaaacaaatacaaataaaaaaataataaaatcctgGGAtggggtttaaaaaaattaaaaataaaagagggTCCCTGAGCATCATCATAGTAAACAACATCATTTTAGTACTTcacaaaaaacatcaaataataatagtaataattactgtaattaatatcCTGATGCAGCTGATGTGTATAATACAAAccggctcattgtgaaaacgtacccacatatacatttctggagagtgcgaattatgtagccagaggtacgtatggtcTTTAAAATGATCGATACGGGGTGGTATAATGCCGCCGATGGCTTCTATTCCATTTCGCACTACTAGCTGATCACtgacctccatgtggacggcttttctgctgctaccactttgtccagtggctcgctgcATACGTCGGTGGACTTGGGAGGCGGAGCGGAGTTGACCGCGCCGACGGGGTTCGAATAcggtgaagaacgattccagaaaacaggaaaaacaaaaaaaaaagtaaacaggtaaataacagagtgagaaagTGGTAAGATTGAAAAACGAGGTAAAAACCAGGCGTTCATGAGGTCCCaccatcggttgggtttagggaagggctGGGCAGGTCAATCTgggcttctgaaaacactatcggttgggtgaAGAAGGTGGGTGTGTCAATCTCGGCTTCTGAAAACACtaacggttggatttagggatggTGTTGGGCAGTTCAATCGGCACTTagaaaaacactattggttggatttagggaagggatGGGGGAAATTGGCAATCTTGAAAACTATCAGTTGGGAGATGGGGGTGGGCTGGTCAATCGGCttatttgaaaacactgtcggttaggtttagggaaggcagtAGGTGGTTCAATCggcacttttgaaaacactatcggttgggtttaaggaaggcggtggg

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process biological_process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process biological_process
GO:0006558 L-phenylalanine metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003176 lncRNA upstream 288467 53982614 ~ 53988776 (+) True XLOC_000703
TCONS_00001173 lncRNA upstream 328735 53946000 ~ 53948508 (+) True XLOC_000701
TCONS_00003175 lncRNA upstream 411406 53864528 ~ 53865837 (+) True XLOC_000699
TCONS_00002881 lncRNA upstream 506504 53765375 ~ 53770739 (+) True XLOC_000697
TCONS_00003174 lncRNA upstream 507496 53760848 ~ 53769747 (+) False XLOC_000697
TCONS_00003179 lncRNA downstream 142549 54611838 ~ 54613479 (+) True XLOC_000715
TCONS_00003180 lncRNA downstream 228884 54698173 ~ 54700755 (+) False XLOC_000721
TCONS_00003181 lncRNA downstream 228894 54698183 ~ 54700755 (+) False XLOC_000721
TCONS_00003182 lncRNA downstream 228899 54698188 ~ 54700755 (+) True XLOC_000721
TCONS_00001210 lncRNA downstream 436461 54905750 ~ 54906707 (+) True XLOC_000726
TCONS_00001188 mRNA upstream 2382 54198893 ~ 54274861 (+) False XLOC_000711
TCONS_00001189 mRNA upstream 3421 54199406 ~ 54273822 (+) True XLOC_000711
TCONS_00001187 mRNA upstream 78153 54194801 ~ 54199090 (+) False XLOC_000711
TCONS_00001185 mRNA upstream 130782 54137089 ~ 54146461 (+) True XLOC_000709
TCONS_00001184 mRNA upstream 150815 54124209 ~ 54126428 (+) True XLOC_000708
TCONS_00001190 mRNA downstream 137065 54606354 ~ 54608032 (+) True XLOC_000714
TCONS_00001191 mRNA downstream 157202 54626491 ~ 54637378 (+) True XLOC_000716
TCONS_00001192 mRNA downstream 168837 54638126 ~ 54647650 (+) False XLOC_000717
TCONS_00001193 mRNA downstream 169504 54638793 ~ 54648766 (+) True XLOC_000717
TCONS_00001194 mRNA downstream 180759 54650048 ~ 54659923 (+) False XLOC_000718
TCONS_00001186 other upstream 91087 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 216033 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 889362 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 909209 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 1216046 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001221 other downstream 659176 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 824336 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 2878609 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 3690862 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 4662003 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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