RNA id: TCONS_00001190


Basic Information

Item Value
RNA id TCONS_00001190
length 1679
RNA type mRNA
GC content 0.47
exon number 1
gene id XLOC_000714
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54606354 ~ 54608032 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGATTCCGCCACATGTCGTCAAAGTGGGAAGCATACCTTTAAGGAAGGAAGCATCGAAAAGACAATGAGAATTCCCACCGAAGAGAAGCCATTCATCTGCCCCGAGTGTGGGAAGTGTTTTTCCGCCAAACAAAAGCTGGAGACCCATATTAGAATCCACACCGGAGAAAAGCCCTTCAGCTGCCCTCAATGCGGAAAAGGTTTCACGCAGCAGGGTCAGATTAAAACACACATGcgaattcacaccggagagaaacccttCACATGCCCTCAATGCGACAAGAGCGTTACGTCAAAACAAAGCCTCAAAagtcacatgaggattcacacaggagagaaaccgttcacctGTCCTGAGTGCGGCATGATCTTCTCCCAACTAGGATATCTTAAACGTCACGTAAGAACTCACACCGGCTTGAAACCTTTCAGCTGCACCCAATGTGGAAAACGCTACAAAGTGAAGCAAAGCCTTGAGagccacatgagagttcacaccggagagaagcctttcGCGTGTCCTCAGTGCGGAAAGGGTTTCACGGCAAAACAGTGTCTTAAAAGTCACATGAGCGTTCACATCGAAGAGAAGCCTTTTAACTGCTCGCTGTGTGAAATGAGCTTCACCCACCAGCAAAGTCTGAAGCGCCACATGTTGATTCACGTCGGAGAAAAGCCCTACGTTTGCCGTCAGTGCGGAAAGAGTTTCTCGGTGAAACAAAGCCTTGAGAGTCACAtcaggatccacaccggagagaaaccgtttGCGTGCGCCGAGTGTGGAAAGGGTTTCGCCGTCAAACAAAACCTTGAGagtcacatgagagttcacaccggAGTGAAGCCTTTTTCCTgtcctcagtgtggaaagagattCACGGTGAAGCAAAGCCTCGAGAGTCACATGACTATTCACACCGGAGAACGGCCTTTTACGTGTTCAATGTGTGACAAGACTTTCACGGTGAAACATAAGCTTGAATACCACATGAGAaatcacaccggagagaagccttacatctgccctcagtgtggaaacaGTTACGCCTTGAGGAACCACCTCGAAAGACATGTACGAATTCACACCGGAGAAAAACCGTTCTCCTGTTCTAAGTGCGCAAAGAGATTCACCATGAAGCAAAGCCTTAAAagtcacatgagagttcacaacAGAACTAAACCGTACATCTGCTCTCAATGCGGAAAGAGGTTCACGGTGAAGCAAAGCCTTGAGAGTCACATGAGccttcacaccggagagaaacctttcACCTGCACTGAATGTGGAAAGAGTTATACGTTAAGACAAAGCTTAGAGACGCACATGAGGGTTCACACTGGTGACAAGTGTTTCAGCTGCTCTGATTGTGGACGGAGTTTCACAGTGAAGCAAAACCTTCATGTCCACATGcgagttcacaccggagagaggCCTTATACTTGCGCGCAGTGCGGAAAGAGATTCACGCAACACGGACAACTGAACcgtcacatgagaattcacactgagCAGAAGACGACTAGGGACCGTTCTGAAGAAACTCTAAATGATGAGACTGCAGACAATTCTTCAGACATACAACATCAGTCAGAGGAGAAAGATGTAGTCACTgtgttaatataatttaaaggccATAAATGATATATTGTTGACGACAAAATTATTAGCGAAATTTT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110914-121 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in female organism.

Ensembl:

ensembl_id ENSDART00000125227

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003177 lncRNA upstream 137065 54277243 ~ 54469289 (+) True XLOC_000712
TCONS_00003178 lncRNA upstream 202207 54401933 ~ 54404147 (+) True XLOC_000713
TCONS_00003176 lncRNA upstream 617578 53982614 ~ 53988776 (+) True XLOC_000703
TCONS_00001173 lncRNA upstream 657846 53946000 ~ 53948508 (+) True XLOC_000701
TCONS_00003175 lncRNA upstream 740517 53864528 ~ 53865837 (+) True XLOC_000699
TCONS_00003179 lncRNA downstream 3806 54611838 ~ 54613479 (+) True XLOC_000715
TCONS_00003180 lncRNA downstream 90141 54698173 ~ 54700755 (+) False XLOC_000721
TCONS_00003181 lncRNA downstream 90151 54698183 ~ 54700755 (+) False XLOC_000721
TCONS_00003182 lncRNA downstream 90156 54698188 ~ 54700755 (+) True XLOC_000721
TCONS_00001210 lncRNA downstream 297718 54905750 ~ 54906707 (+) True XLOC_000726
TCONS_00001188 mRNA upstream 331493 54198893 ~ 54274861 (+) False XLOC_000711
TCONS_00001189 mRNA upstream 332532 54199406 ~ 54273822 (+) True XLOC_000711
TCONS_00001187 mRNA upstream 407264 54194801 ~ 54199090 (+) False XLOC_000711
TCONS_00001185 mRNA upstream 459893 54137089 ~ 54146461 (+) True XLOC_000709
TCONS_00001184 mRNA upstream 479926 54124209 ~ 54126428 (+) True XLOC_000708
TCONS_00001191 mRNA downstream 18459 54626491 ~ 54637378 (+) True XLOC_000716
TCONS_00001192 mRNA downstream 30094 54638126 ~ 54647650 (+) False XLOC_000717
TCONS_00001193 mRNA downstream 30761 54638793 ~ 54648766 (+) True XLOC_000717
TCONS_00001194 mRNA downstream 42016 54650048 ~ 54659923 (+) False XLOC_000718
TCONS_00001195 mRNA downstream 47128 54655160 ~ 54659806 (+) True XLOC_000718
TCONS_00001186 other upstream 420198 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 545144 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 1218473 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 1238320 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 1545157 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001221 other downstream 520433 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 685593 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 2739866 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 3552119 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 4523260 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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