XLOC_000714 (si:ch211-202h22.10)


Basic Information

Item Value
gene id XLOC_000714
gene name si:ch211-202h22.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54606354 ~ 54608032 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001190
GAAGATTCCGCCACATGTCGTCAAAGTGGGAAGCATACCTTTAAGGAAGGAAGCATCGAAAAGACAATGAGAATTCCCACCGAAGAGAAGCCATTCATCTGCCCCGAGTGTGGGAAGTGTTTTTCCGCCAAACAAAAGCTGGAGACCCATATTAGAATCCACACCGGAGAAAAGCCCTTCAGCTGCCCTCAATGCGGAAAAGGTTTCACGCAGCAGGGTCAGATTAAAACACACATGcgaattcacaccggagagaaacccttCACATGCCCTCAATGCGACAAGAGCGTTACGTCAAAACAAAGCCTCAAAagtcacatgaggattcacacaggagagaaaccgttcacctGTCCTGAGTGCGGCATGATCTTCTCCCAACTAGGATATCTTAAACGTCACGTAAGAACTCACACCGGCTTGAAACCTTTCAGCTGCACCCAATGTGGAAAACGCTACAAAGTGAAGCAAAGCCTTGAGagccacatgagagttcacaccggagagaagcctttcGCGTGTCCTCAGTGCGGAAAGGGTTTCACGGCAAAACAGTGTCTTAAAAGTCACATGAGCGTTCACATCGAAGAGAAGCCTTTTAACTGCTCGCTGTGTGAAATGAGCTTCACCCACCAGCAAAGTCTGAAGCGCCACATGTTGATTCACGTCGGAGAAAAGCCCTACGTTTGCCGTCAGTGCGGAAAGAGTTTCTCGGTGAAACAAAGCCTTGAGAGTCACAtcaggatccacaccggagagaaaccgtttGCGTGCGCCGAGTGTGGAAAGGGTTTCGCCGTCAAACAAAACCTTGAGagtcacatgagagttcacaccggAGTGAAGCCTTTTTCCTgtcctcagtgtggaaagagattCACGGTGAAGCAAAGCCTCGAGAGTCACATGACTATTCACACCGGAGAACGGCCTTTTACGTGTTCAATGTGTGACAAGACTTTCACGGTGAAACATAAGCTTGAATACCACATGAGAaatcacaccggagagaagccttacatctgccctcagtgtggaaacaGTTACGCCTTGAGGAACCACCTCGAAAGACATGTACGAATTCACACCGGAGAAAAACCGTTCTCCTGTTCTAAGTGCGCAAAGAGATTCACCATGAAGCAAAGCCTTAAAagtcacatgagagttcacaacAGAACTAAACCGTACATCTGCTCTCAATGCGGAAAGAGGTTCACGGTGAAGCAAAGCCTTGAGAGTCACATGAGccttcacaccggagagaaacctttcACCTGCACTGAATGTGGAAAGAGTTATACGTTAAGACAAAGCTTAGAGACGCACATGAGGGTTCACACTGGTGACAAGTGTTTCAGCTGCTCTGATTGTGGACGGAGTTTCACAGTGAAGCAAAACCTTCATGTCCACATGcgagttcacaccggagagaggCCTTATACTTGCGCGCAGTGCGGAAAGAGATTCACGCAACACGGACAACTGAACcgtcacatgagaattcacactgagCAGAAGACGACTAGGGACCGTTCTGAAGAAACTCTAAATGATGAGACTGCAGACAATTCTTCAGACATACAACATCAGTCAGAGGAGAAAGATGTAGTCACTgtgttaatataatttaaaggccATAAATGATATATTGTTGACGACAAAATTATTAGCGAAATTTT

Function

symbol description
si:ch211-202h22.10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in female organism.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110914-121 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in female organism.

Ensembl:

ensembl_id ENSDARG00000087290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001190 True 1679 mRNA 0.47 1 54606354 54608032

Neighbor

gene id symbol gene type direction distance location
XLOC_000712 NA coding upstream 137065 54277243 ~ 54469289 (+)
XLOC_000713 NA coding upstream 202207 54401933 ~ 54404147 (+)
XLOC_000711 CABZ01067150.2 coding upstream 331493 54194801 ~ 54274861 (+)
XLOC_000710 CABZ01067150.1 coding upstream 420198 54186039 ~ 54186156 (+)
XLOC_000709 TNPO2 coding upstream 459893 54137089 ~ 54146461 (+)
XLOC_000715 NA coding downstream 3806 54611838 ~ 54613479 (+)
XLOC_000716 si:ch211-202h22.9 coding downstream 18459 54626491 ~ 54637378 (+)
XLOC_000717 si:ch211-202h22.8 coding downstream 30094 54638126 ~ 54648766 (+)
XLOC_000718 si:ch211-202h22.7 coding downstream 42016 54650048 ~ 54659923 (+)
XLOC_000719 gprc5bb coding downstream 65814 54673846 ~ 54680103 (+)
XLOC_000703 NA non-coding upstream 617578 53982614 ~ 53988776 (+)
XLOC_000699 NA non-coding upstream 740517 53864528 ~ 53865837 (+)
XLOC_000721 NA non-coding downstream 90141 54698173 ~ 54700755 (+)
XLOC_000729 NA non-coding downstream 351460 54959492 ~ 54985297 (+)
XLOC_000733 CU467849.1 non-coding downstream 520433 55128465 ~ 55128579 (+)
XLOC_000735 NA non-coding downstream 576732 55184764 ~ 55191262 (+)

Expression


Co-expression Network