CI01000006_06691077_06692003


Basic Information

Item Value
gene id CI01000006_06691077_06692003
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6690798 ~ 6692227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06691077_06692003.mRNA
AGAGTGAATGGTGACCCTCTTAAAGAGGAGTTCAGAGGCCTTCTCGAACTTTAAGCCAAGACTTTTGGTGTTTTTTTGTCATTTTTAATGGTTTAACACAACATTTATTTTAAATGATTTTTATTCTTTCAACAGTAACACAAGATACACAAGACTGAACACAAGAGAAATACTAGGTTATTTGTGTCAGCCTTGTTTGATCTGGAGCCGGATTTTGAGAAGGAATGGAAAACAACTCCTCTTTCCACATTCTCACTGTCACGGCTCTGAATGAGTGGGACTGGACCAGCAGGATCATATTTTTTTCTATTGCACTTCCATGTTACCTTTTGACTGTTGTTCTGAATGCCACCTTGATTATGATTATTGCTTTTGAGAAAGCTCTGCATGAGCCGATGTACATTTTCTTGTGTAATCTCTGTGTTAATGATCTGTGTGGAACTACGGGGTTTTATCCCAGGGCCTTGGTGTATTTACTCACAGAAACAAATAGGATTTCATTTGAGGAATGCATTGTACAAGGTCTTGTCATCGTCGTTTATGCAGTTGGTGAATTCACAAATTTAAGTGTCATGGCGGTTGATAGATACATAGCGATATGTCGACCTTTACACTATCATAGTATTATGTCACCTTTCACTGTGCTAGGCCTGGTGACTTTTCTTTGGGCATTTCCTTGTTTTGCAAGTCTGTTAGCCATTTTATTGGCTATTAAAAACCCTATTTGCAGATATGACATAAATAAACTTTTCTGTGAAAACCTGTCCTTGGTGAATCTTGGATGCAGACAAGATATTTCCCAAGGGATTTTTAATGGATGGATGTATATCAGCATGTCTGTCTTAATTGGTTTGGTTCTGATTTCCTATTTTAAAATAATTCTAGCTTGTAGAAAATCTAAAGTAAATCAAGAGAAGTTCTTCAGCACGTGTATGCCACACTTGATTTCCTTTCTGAACTACATAGTCTGTTCCTTTTTTGATTCTTCCCAGACAGAATTAAGAACAAACACATTGTCTCATACTTTTTTGTCTGTTATATTCCTGACTATTCCCCCTTTTGTCAATCCTTTAATATATGGTATAAAATTAGCTCCAATCAGGGCAAAAATATTGTATATTTTCCGAAGTTCAAGGATTAAAAACATGTAGCATTCACTGTTATAAATAATTTAGTGCTGACTGCTTTTTGTGTCATTATGCGTCGCAGTGACGATTCATTAAAAGTGACAATGATAAAAGTTTTATTTTGAACTGCAGAAGCAAGCATGTGCTCATATAATGTTATTTAAACAGGATAATGTATTTTGAGTTGTGTTAAATGTACATGATTTAATGGCTAAGAAATATATGTATATTTATATCAAATGCTTATGCCTTAGCAGTTGACACTGCATATAACACATCTTTAATGCTATTAAAGTCAATAAA

Function

NR:

description
odorant receptor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06691077_06692003.mRNA True 1430 mRNA 0.35 1 6690798 6692227

Neighbor

gene id symbol gene type direction distance location
CI01000006_06679176_06684406 POLD3 coding downstream 5421 6679176 ~ 6685603 (-)
CI01000006_06649164_06650940 NEU3.1 coding downstream 39858 6648969 ~ 6650940 (-)
CI01000006_06641630_06642872 NEU3.3 coding downstream 46425 6640739 ~ 6644373 (-)
CI01000006_06604787_06615427 NEU3.3, NEU3.4 coding downstream 73086 6604145 ~ 6617712 (-)
CI01000006_06456792_06551677 GRIA4, GRIA4A, GRIA4B coding downstream 139121 6456792 ~ 6551677 (-)
CI01000006_06704378_06705334 OR125-1 coding upstream 11133 6703360 ~ 6705532 (-)
CI01000006_06809736_06812112 NA coding upstream 117318 6809545 ~ 6812690 (-)
CI01000006_06815723_06816988 B9D2 coding upstream 123201 6815428 ~ 6817179 (-)
CI01000006_06865010_06869448 NA coding upstream 172437 6864664 ~ 6869877 (-)
CI01000006_06947556_06950105 RTN2B, RTN2 coding upstream 255272 6947499 ~ 6950105 (-)
G44678 NA non-coding downstream 2045 6688509 ~ 6688753 (-)
G44677 NA non-coding downstream 3202 6687372 ~ 6687596 (-)
G44641 NA non-coding downstream 103660 6583492 ~ 6587138 (-)
G44681 NA non-coding upstream 20492 6712719 ~ 6713129 (-)
G44686 NA non-coding upstream 40071 6732298 ~ 6732498 (-)
G44688 NA non-coding upstream 62887 6755114 ~ 6755616 (-)
G44699 NA non-coding upstream 93364 6785591 ~ 6785914 (-)
G44701 NA non-coding upstream 96600 6788827 ~ 6789065 (-)
CI01000006_04560607_04560993 NA other downstream 2128730 4559509 ~ 4562068 (-)
G43549 NA other downstream 2335370 4352510 ~ 4355428 (-)
G43102 NA other downstream 3756814 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 4064612 2624436 ~ 2626776 (-)
G42934 NA other downstream 4108592 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 280997 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 810918 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 3790629 10453613 ~ 10484006 (-)
G47658 NA other upstream 4338684 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 4958136 11650363 ~ 11654424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018881 or124-4 coding NC_007132.7 CM002905.2 21738150 ~ 21740682 (+)