CI01000006_06456792_06551677 (GRIA4, GRIA4A, GRIA4B)


Basic Information

Item Value
gene id CI01000006_06456792_06551677
gene name GRIA4, GRIA4A, GRIA4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6456792 ~ 6551677 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06456792_06551677.mRNA
ATGAGGATTTCTTGTAATCAGCTTTTACTGCTATTCTCTTGCGTTTGGGGACTCACTATGGGTGCTTTTCCGAGCAGCGTTCAAATCGGCGGGCTGTTCATCAGGAACACAGATCAGGAGTACACTGCCTTTCGGTTGGCCATTTTTCTTCACAACACAAGTCCTAATGCATCTGAGGCCCCTTTTAACTTGGTACCCCACGTGGACAACATTGAGACAGCCAACAGCTTTGCCGTGACCAATGCCTTCTGCTCGCAGTACTCGAGGGGCGTGTTCGCCATTTTTGGACTGTACGACAAGAGGTCGGTTCACACGCTAACTTCCTTCTGCGGCGCACTACACATCTCCCTCATCACGCCCAGTTTCCCCACCGAGGGCGAGAGCCAGTTTGTGTTACAGCTGCGGCCATCCATACGAGGGGCCCTTCTCAGCTTGCTAGACCACTACGACTGGAATCGGTTCGTCTTTCTCTACGATACTGACAGAGGTTATTCGATACTACAGGCTATCATGGAAAAGGCAGGCCAGAATGGTTGGCAGGTCAGCGCTATATGTGTCGAGAACTTTAATGATGCCAGTTACCGGCAGCTTCTCGAAGACCTGGACCGTAGGCAGGAAAAGACGTTTGTCATAGACCTGGAGGCAGAGAGACTGAACAACATGCTGGAGCAGATTGTGAGTGTCGGCAAGCATGTCAAAGGCTACCATTACATCATGGCAAATTTGGGTTTTAAGGACATCAATCTAGAGCGTTTCATGCATGGGGGAGCCAATGTGACAGGCTTTCAGCTGGTGGACTTCAGCAATCCCATGGTTATTAAACTCATGCAACGCTGGAACAAGTTGGACCAGCGCGAGTACCCCGGCTCTGACGCACCTCCCAAGTACACTTCCGCTCTGACATATGATGGCGTGATGGTGATGGCAGAAGCCTTCCGGAACCTTCGCAGACAGAAGGTGGACATCTCCCGCAGGGGCAACGCTGGAGACTGCCTGGCCAACCCCGCTGCACCCTGGAACCAGGGCATCGACATGGAGCGCACACTCAAACAGGTGCGCCTCCAAGGATTAACAGGAAATGTCCAATTCGACCACTACGGCCGCAGAGTCAACTACACAATGGATGTTTTCGAATTAAAAAGTAACGGCCCCAGAAGGATTGGATATTGGAATGATGCTGATAAGTTGGTTCTGACCCAGGATCAAGCCTTGCTTCCCAACGAAACGTCTGGCATGGAGAACAGAACCGTGATTGTGACGACTATTATGGAAGGGCCGTATGTAATGCTGAAGAAGAACTGGGAGATGTATGAGGGGAACGAGCAATATGAGGGATACTGCGTGGATCTGGCATTTGAAATCGCCAAACACATTGGTTTCAAGTATAAGATCTCCATCGTGCCTGATGGAAAGTATGGAGCTCGGGACCCAGAGACAAAGATCTGGAACGGGATGGTTGGGGAGCTGGTGTACGGGAAAGCGGAAATCGCTGTGGCCCCATTGACTATCACTTTGGTCCGGGAGGAGGTCATTGACTTCTCGAAACCCTTCATGAGCTTGGGCATTTCCATCATGATTAAGAAGCCCCAGAAATCCAAGCCGGGCGTCTTCTCCTTCCTGGACCCACTGGCCTACGAGATCTGGATGTGCATTGTGTTCGCCTATATCGGCGTAAGCGTGGTGCTCTTCCTGGTCAGCCGCTTCAGCCCGTATGAGTGGCACACCGAGGAGCCCGAGGAGGGCACTGACGGTCTGCCTAGCGACCAGCCCCCCAATGAGTTTGGGATCTTCAACAGTCTCTGGTTCTCCCTGGGAGCCTTCATGCAGCAAGGTTGCGACATCTCGCCCAGGTCTCTATCTGGACGTATCGTGGGTGGAGTGTGGTGGTTTTTCACCCTCATCATCATCTCCTCCTACACAGCCAACCTGGCTGCTTTCCTCACTGTGGAGAGGATGGTGTCGCCCATTGAGAGCGCTGAGGACCTGGCCAAGCAGACAGACATAGCGTATGGTACACTTGACTCAGGCTCCACCAAAGAGTTCTTCAGGAGGTCAAAGATCGCCGTTTATGAGAAAATGTGGAGCTACATGAAGTCGGCCGAGCCCACGGTGTTCACGAAGACCACGGCAGAGGGTGTGGCACGGGTGAGAAAGTCCAAAGGGAAGTACGCCTTCCTGCTGGAGTCCACAATGAACGAGTACACGGAGCAGCGCAAACCCTGCGACACCATGAAAGTGGGAGGCAACCTGGACTCCAAAGGCTACGGGGTGGCCACGCCCAAGGGCTCACAGTTAAGAAGTGCAGTTAACCTGGCAGTTTTAAAACTGAATGAACAAGGCCTGTTGGACAAATTGAAAAACAAGTGGTGGTACGACAAAGGAGAGTGTGGCAGCGGAGGAGGTGGTGAGAAGGACAAGAGCTCACAGGCCCTCAGCCTCAGTAATGTGGCTGGGGTCTTCTACATTCTGGTCGGGGGCCTGGGCCTGGCCATGCTGGTGGCCCTCATCGAGTTCTGCTACAAGTCCCGAAACGAAGCCAAGAGAATGAAGCTCACCTTTACCGAAGCCATGCGGAACAAGGCGCGCCTGTCCATTACGGGGAGCGTGGGCGAGAACGGGCGCGTCCTGACTCCCGACTGCCCGAAGGCTGTCCACTCCGGCCCCTCTCTGCGGCAGAGCTCCGGACTGGCTCTGGTGTCGTCCGACTTACCG

Function

symbol description
gria4a Predicted to enable AMPA glutamate receptor activity. Predicted to act upstream of or within ion transport. Located in dendrite and neuronal cell body. Is expressed in nervous system. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human GRIA4 (glutamate ionotropic receptor AMPA type subunit 4).
gria4b Predicted to enable AMPA glutamate receptor activity. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine and plasma membrane. Is expressed in nervous system; otic vesicle; and ventral mandibular arch. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human GRIA4 (glutamate ionotropic receptor AMPA type subunit 4).
gria4 Enables AMPA glutamate receptor activity. Predicted to be involved in positive regulation of glutamatergic synaptic transmission. Located in extracellular vesicle. Implicated in schizophrenia.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05200 GRIA4; glutamate receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06456792_06551677.mRNA True 2712 mRNA 0.54 16 6456792 6551677

Neighbor

gene id symbol gene type direction distance location
CI01000006_06418196_06429736 CUL5B, CUL5, CUL5A coding downstream 25979 6418008 ~ 6430813 (-)
CI01000006_06382586_06409914 CAPN5B, CAPN5, CAPN5A coding downstream 46878 6381824 ~ 6409914 (-)
CI01000006_06334522_06363794 MYO7A, MYO7AB coding downstream 90522 6333739 ~ 6366270 (-)
CI01000006_06309877_06316645 NADK2 coding downstream 140147 6309279 ~ 6316645 (-)
CI01000006_06276720_06284605 LMBRD2B, LMBRD2 coding downstream 171640 6275595 ~ 6285152 (-)
CI01000006_06604787_06615427 NEU3.3, NEU3.4 coding upstream 52470 6604145 ~ 6617712 (-)
CI01000006_06641630_06642872 NEU3.3 coding upstream 89062 6640739 ~ 6644373 (-)
CI01000006_06649164_06650940 NEU3.1 coding upstream 97292 6648969 ~ 6650940 (-)
CI01000006_06679176_06684406 POLD3 coding upstream 127499 6679176 ~ 6685603 (-)
CI01000006_06691077_06692003 NA coding upstream 139121 6690798 ~ 6692227 (-)
G44587 NA non-coding downstream 6709 6445465 ~ 6450083 (-)
G44606 NA non-coding downstream 158930 6297540 ~ 6297862 (-)
G44590 NA non-coding downstream 159722 6292449 ~ 6297070 (-)
G44568 NA non-coding downstream 190885 6264944 ~ 6265907 (-)
CI01000006_06261946_06262932 NA non-coding downstream 193934 6261556 ~ 6262978 (-)
G44641 NA non-coding upstream 31815 6583492 ~ 6587138 (-)
G44677 NA non-coding upstream 135695 6687372 ~ 6687596 (-)
G44678 NA non-coding upstream 136832 6688509 ~ 6688753 (-)
CI01000006_04560607_04560993 NA other downstream 1894724 4559509 ~ 4562068 (-)
G43549 NA other downstream 2101364 4352510 ~ 4355428 (-)
G43102 NA other downstream 3522808 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 3830606 2624436 ~ 2626776 (-)
G42934 NA other downstream 3874586 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 421547 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 951468 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 3931179 10453613 ~ 10484006 (-)
G47658 NA other upstream 4479234 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 5098686 11650363 ~ 11654424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018890 gria4b coding NC_007132.7 CM002905.2 21894067 ~ 22082510 (+)