CI01000006_06382586_06409914 (CAPN5B, CAPN5, CAPN5A)


Basic Information

Item Value
gene id CI01000006_06382586_06409914
gene name CAPN5B, CAPN5, CAPN5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6381824 ~ 6409914 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06382586_06409914.mRNA
GCCTTCGAGGGGCAGCATTACGCCACCCTCAAGAGGCAGTGTCTACAGAGTGGAGAGCTGTTTGAGGACCCACTGTTTCCAGCCATAGACCACTCTCTCTTCTACCTGGGTAACAGGATTGGCCATGTGCACTGGAAAAGACCCGGGCTGCTGTCACTGTGCCCAGTATATGTCAGCTGTTTAAAGGGATGCAGACCTTTACTTTTAGGTCACTTCAAATCTCACTTCTTCCTTGTTGTTTCTGGGCTTTGTGTCCCTGTGGTTGTGACGAGTCTGGTGCAGAGGAGCTGTGTGATGATCCTCACTTGTTTGTGGATGGGATCAGTGCCCATGATCTGCACCAAGGGCAGCTGGGAAACTGCTGGTTTGTGGCGGCCTGCACCAGCTTGGCTTCCCGAGAGTCTCTGTGGCAGAAAATGCGACACTGCTCCCACGCAGATGGATAAAAACAACCCAGAGATAACAAAATATTTGGGAAAAGGGTGTGAGGTGTTTTCCCCTGCCTGGGGAAACATTTCCTCCCCCCTAGAAACACACATCACCATGAAGGAGATGACTTATAGGGCTTTCCCATGTCTGGAATTCAATGGAGCACTCGATGCTCTCCGGAGTCAAGCCATCTTCAAAGGCGAACAGAAAATACATCACCTTGCGGACCTTGGCCAGCTCGGCTATCCTCTCGCCAAACTCCTGGGCATCAGCCTCGTAGCATTGGATGACATTGTCGTCTGCGCTTTTCCAGAAGAGCCCTGTCGGTTCGAGGAGCTGGCGGGTCATGAGATGGGTGAGGTCGGGTGTCCAGAGCTGGGAGGTGGCAATGATGTTGAGGCGGCCAGGGGTAGGGATGCGGATGTTCCAGCGGGTGAAATGCAGGGCCTGTTCGGAGAAGTCCAGACGGTTATTCCAGACTGGAAGGAGCAGGAATGGGATCCAGAGAAGGAGGACTCTTATGCAGGAATTTTCCACTTCCGCTTCTGGCGGTTTGGGGAATGGATGGACGTGGTGATCGATGACCGTCTCCCTACAGTGGACAACCAGCTGGTGTACTGCCATTCAAATGATAGCAATGAATTCTGGAGTGCCCTTGTGGAAAAAGCCTATGCCAAAGTTTATGGTTGCTATGAAGCATTGGATGGTGGGAACACGGCTGATGCCCTGGTGGACTTCACTGGCGGAGTGTCGGAACCTATGGACCTTCTGGAGGGCCAGTTTGCTCAGGATGAAGTCGCCAGAAACCAGCTCTTTGAAAGAGTGCTCAAGGTCCATAATCGAGATGGCCTTATCAGCTGCTCTATCAGGGCAACCACAGTAGAGGACATGGAGGCAAGACTGGACTGTGGGTTAGTGAAAGGCCACGCCTATGCAGTGACCGATGTTCGCAAGGTTCGCCTGGGACATGGCCTGCTGGCATTTTTCAAGTCAGAAAAGCTACACATGATCCGCATGAGGAACCCTTGGGGCGAGAAGGAATGGAGTGGACCCTGGAGCGACAGCTCAGAGGAGTGGAAGAAAGTGAGCAAGAGTGAGAGAGAGAAACTGGGCGTCACTGTTCAGGATGATGGAGAGTTTTGTTATCAAACTTCACTTCCCTTGCTGGCTATAAACTGCGTCACCAGGATGAACTTTGAGGATTTCTGTCACTACTTCACCGACCTGATCCTGTGTCGACTAATAAACACATCCTACTTGAGCATTCATAAGACTTGGGAGGAGGAGGTGATGAGAGGCTCCTGGATCCACCGAGACGACCCGCTCCGCAACCGTGCCGGAGGCTGCATTAACCATAAAGCCACTTTTCTTCAAAACCCACAGGCATTTAAAGCTTGCAGGCTTCATTGGAAAGCATGTTTCTGCCCACAGTATGTTTTTGATGTAAGAAAAATAGAAGACGAGGTGCTGATCTGCCTGCAGCAAAAGGAACGCAGAGCTACTCCCAAGGAGGGCAAAGGCGAGAACCTAGCCATTGGATTTGACATCCATAGGGTGGAGTTGAACAGAAAATACAGAATGCACTCAGCTCAGCAGAAGGTCGCAGGGTCGATCTACATCAACTCTCGCTGCGTGTTTCTGAGGAAAGAGCTGAAGGAGGGGCGTTACGTCATCATCCCTACAACCTTTGACCCTGGTCAACAAGGAGAGTTCCTGCTCAGAGTCTTCACTGATGTGCCTTCAGACTGCAAAGAATTAACACTGGACGAGCCTCCTCAGACATGCTGGACTGGGATTTGCGGCTACCCTCAGCTGGTCACCCAGGTGCATGTGTTAAGTGCCGACGGCCTGCAGGGCCAAGACGCCAATGGAGCCTCTGACCCATATGTGATCATCACCTGTGAGGGGGAGAAAGTTCGTTCCCCCGTGCACAAAGACACACGCTGCCCTAATTTTGATATTAAGGGAATATTCTACCGCAAAAAGCCAAAGGAAGGCATTCACATCGAGATCTACAATAAGAATGTGATTGTTGACACCTTCCTGGGTCAGGTAACCCTCTTTAGTGACCCTAACGACCGCCAAGAGCAGCACACGGTCTACCTTAAAGACAAGGGTAGTCGCCAAGACAACAACCTTCCAGGCACGCTGACTGTGCGTGTGATCACCTGCACCACTTTAACCAACATCTGATCAGAAACTAAATGCAGCCTCATGCATGCCGCCTCTTCACACTTTCAGCTTGGTTTCCTCATTCACCCTCAATGCCTTTAGAACTAATTTTCTACTGTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATACAGTAAAGGGTTAGTTCACCCCTCAAAAAACTGAAAGTCATTATTCACTCTCATGTCATTCCAAACCCCTTAGTTGTTATGTTTTCTATAGATCAAAAAAGGACAATTTTGAATAATCCTCCTATTTGGTAGTGACCACAGTAATCCATACAATAGTCTTTTGTAGCCGTATGATAGATTTATGTAAGGAACAGACTGAAATTGAAGTCATTATTCAGTGATAATCTTCTGCTCCAGTGATCTGTTAACTTGAGAACACCTGTGACAGGATTGAATCAGTGAGTTGAACTTGGGCTGTGTCCATAATCACCTCCTAAACCCTCATTCACTATTAGTCCACTAATATAGTTCACTTCAGGGAGTGAATGAAGACGAGTGAGTGAATTCGAACATTGTGTGCGCCGGAAGGGCTGCCGCTTTTGCGTAATTTGTGCTTGCTGTTTAATAATAGTTTGAAACCTAGCAAACTGGCAGCTCCAATAGTAAGATGAAAAGATTTGTTTTGAACTCTGTTATGGAAACTCTGTATAAACCTTAATTAAACAATTTAATAATTAAAATTAAAAAGGAATTTATACCAGTGGCGAGGCTATTAGTAGCCCATGATAAATAATAATTAATTAAA

Function

symbol description
capn5b Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in nervous system. Human ortholog(s) of this gene implicated in neovascular inflammatory vitreoretinopathy. Orthologous to human CAPN5 (calpain 5).
capn5a Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in hatching gland; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in neovascular inflammatory vitreoretinopathy. Orthologous to human CAPN5 (calpain 5).
capn5 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Located in cell surface. Implicated in neovascular inflammatory vitreoretinopathy.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08574 CAPN5; calpain-5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06382586_06409914.mRNA True 3384 mRNA 0.48 16 6381824 6409914

Neighbor

gene id symbol gene type direction distance location
CI01000006_06334522_06363794 MYO7A, MYO7AB coding downstream 15554 6333739 ~ 6366270 (-)
CI01000006_06309877_06316645 NADK2 coding downstream 65179 6309279 ~ 6316645 (-)
CI01000006_06276720_06284605 LMBRD2B, LMBRD2 coding downstream 96672 6275595 ~ 6285152 (-)
CI01000006_06272106_06273111 CAPSL, CAPSLB coding downstream 108713 6272071 ~ 6273111 (-)
CI01000006_06261946_06262932 NA coding downstream 118846 6261556 ~ 6262978 (-)
CI01000006_06418196_06429736 CUL5B, CUL5, CUL5A coding upstream 8094 6418008 ~ 6430813 (-)
CI01000006_06456792_06551677 GRIA4, GRIA4A, GRIA4B coding upstream 46878 6456792 ~ 6551677 (-)
CI01000006_06604787_06615427 NEU3.3, NEU3.4 coding upstream 194233 6604145 ~ 6617712 (-)
CI01000006_06641630_06642872 NEU3.3 coding upstream 230825 6640739 ~ 6644373 (-)
CI01000006_06649164_06650940 NEU3.1 coding upstream 239055 6648969 ~ 6650940 (-)
G44606 NA non-coding downstream 83962 6297540 ~ 6297862 (-)
G44590 NA non-coding downstream 84754 6292449 ~ 6297070 (-)
G44568 NA non-coding downstream 115917 6264944 ~ 6265907 (-)
G44570 NA non-coding downstream 176408 6205064 ~ 6205416 (-)
G44587 NA non-coding upstream 35551 6445465 ~ 6450083 (-)
G44641 NA non-coding upstream 173578 6583492 ~ 6587138 (-)
CI01000006_06679176_06684406 POLD3 non-coding upstream 197878 6679176 ~ 6685603 (-)
G44677 NA non-coding upstream 277458 6687372 ~ 6687596 (-)
CI01000006_04560607_04560993 NA other downstream 1819756 4559509 ~ 4562068 (-)
G43549 NA other downstream 2026396 4352510 ~ 4355428 (-)
G43102 NA other downstream 3447840 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 3755638 2624436 ~ 2626776 (-)
G42934 NA other downstream 3799618 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 563310 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 1093231 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 4072942 10453613 ~ 10484006 (-)
G47658 NA other upstream 4620997 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 5240449 11650363 ~ 11654424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018895 capn5b coding NC_007132.7 CM002905.2 22158744 ~ 22214734 (+)