CI01000006_06276720_06284605 (LMBRD2B, LMBRD2)


Basic Information

Item Value
gene id CI01000006_06276720_06284605
gene name LMBRD2B, LMBRD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6275595 ~ 6285152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06276720_06284605.mRNA
AGAAGGTTTGTGTGTTGCTAACCATGCGTATGTTTTTGTACTAGCGATGTCCGAATCGTGAATCAATCATTTAAATCGGATCTTTTTGATGATTTGGTTGAATCGTTTGTAGCACATTCCTTTATGTAACGTTATTGTCTTGTTTTTTTTTTTTACCTTGACCATGAGCCTTGCATAAAGTATGATGATGATGATGATGATGATGAACCGATTCCTATTTTCCAAAAACATACTTAGGATGCTTTTTGGGAACGCAGCCATGAATGAGTTGTTCACGAATCGAATTGAATCAGTCTGAGGCATTTCTCCAGTCAATGACTCGTTGAACCATTGAATATCAGTGGTAATAGTAGAAATGATCATGACTTGATTATCAGAGTCCAAAAGAACCGATTCCGTCCGAAAACAACTGAATCGCGGAAATAAGTTTAACTTGCTGCCATCACTTTTTCCCAACGCCCAGTAAACGAACTTGATTGTCTGCATTGTGAGATTAGTTAGGCGTGAATGAATCAAGAAATTACAGATAATTACTCTTTATGCTCAAATGAGAAAGAACAAAAGGGTCCCTGAGATGCATACTGTCAGTTGTCATGAACAGCTTGAATACCTCACAGTCATTGATGAGGTTGCTCTCAGTCCCAGGAAGAGTGAGCGGAGTGCGGCTTGCACTATGAGCGGGGCAGCGCTGGGATTAGAGATTGTGGTTGTCTTTTTCCTGGCTCTCTTTCTCCTGCATCGCTATGGAGACTTTAAGAAGCAGCAGCGCATGGTTCTCTTTGGCACACTGCTGGCTTGGTATTTGTGCTTTCTCATCGTCTTCATTCTCCCCCTGGATGTCAGCACGACAATCTACAAGCAGTGTTTAATTGATCAAGAAGCACATGCCCAGACGCCCTCTGTGAGTCCTGTCCTTTCAAACCAGACGACTCCAAATACCTCTGTCTCATCCAGTATAAGCACTCAACATGTTTGCTATAAACCATGGAGCTACATTCCAGATGGCATCATGCCAGTGTTCTGGAGGGTTGTTTATTGGACCTCACAGTGTCTTACTTGGCTCCTTCTGCCATTCATGCAGTCATATGCTCGCTCTGGTGGATTCTCCATTACTGGAAAGATCAAGACGGCCCTGATTGAGAATGCCATCTATTATGGCACATACCTTTTCATCTTCGGCTCTCTTCTCATCTATGTGGCTGTGCATCCTCAGTGGCACCTCTCCTGGTATGAGCTGCAAACCATCGGCATCACTGCGGCCAACACTTGGGGTCTGTTTCTTCTAGTGTTGCTGTTGGGCTACGGCCTGGTCGAGATCCCCCGCTCATACTGGGAGGCCTCACGCCAGGGTCACCTCCTCATCAAGACTTACTTTAAAGCAGCCAAGCTCATGACAGAGAAGGCAGATTCAGAGGAGAACCTAGAAGATGTCATGGAGGAAGTGAGAAAAATCAATGAATCGATCAAATATAATCACCCATTAAGGAAGAACGTGGACACCATTCTCCGAAAGTGTCCAGTTGAATATCAGGAGAAAATGGGCAGGAACATGGATGACTATGAGGATTTTGATGATAAACAAAACACATATCCCACTGAAAGAAGTCTTTCGAAATTACACAAGCAGGTGATCTACGCAGTGCAGCGGCATAATCGCACACGAGTTCAGTGGCAGATTTTGTTAGAACAGGCTTTCCATCTCGAGGACGTTGCCAAGAACGAAACCAGCACCTCTCGGCAGTTCGTTCACAGCTTTGCCCCTGCAGAGCCTGTAGGCTGGTTTAGACGCTACATTTATACTCCCACAGTAGAATGGTACTGGGAGTGTTTGCTGAAGCAGTGGTTTTACCGTATGCTGGCTGTGGTTCTGTCGCTCTTTTCGGTGGCTGTGGTTTGGTCGGAGTGCACTTTCTTCAGTACTCGTCCTGTTCTGTCACTCTTTGCGGTGTTTATTCAGCTTGCTGAGAGAGATTACAACTATCTGTACATTGAGATGGCGTGCTTCATTACCATCTTCTTCCTCTGCACCTGCGTCTACTCCACTGTGTTTCGCATCAGAGTCTTTAACTACTACTACCTGGCCTCACATCACCAAACCGATGCCTACAGCCTGCAGTTCAGTGGCATGCTTTTTTGCCGCTTGACTCCCCCACTTTGTCTAAACTTCCTGGGACTGATTCACATGGATTCTGCCATATCCCACCAAGCAAAGGAGCAGACGGCATACACCTCTATCATGGGTTCCATGCGGGTCCTGTCCTTCATTGCCAATGGCTTCTACATATATTACCCAATGCTGATCGTCATTCTCTGTATTGCTACATACTTCAGTCTTGGTACACGTTGTCTGAACCTCCTGGGTTTCCAGCAGTTTGTGGGAGAGAATGAAATGACTTCTGACCTCATAGATGAAGGCAGAGAACTCCTGCGCAGAGAAAGAAGAAAGCGGCAAAGAATAGAAGATGGAGAGAACAGACGAAGAGAATGGAGAGAACGTTATGCTCAGCGAGATGAGGTTGCTGCTAGAAACCAAACCTCCATATCTGAGATGAAGGAAACCAACTATGGTGAAACCCTAAATTCAAACACAAACCGACAGGCCAAGTACACACGTAGCAGCAACCAGTCAGGACGAGACAGCATTGAGTTGTTGCAAGACGCTGAGCCATTGGACTTCAATGCTGAAACACTCACTGATGACCCTTTACAATCTGACCCTGGCAGACATGTCGGTGGAAGGTACCTCTCCATGTCGTCTTCTCGAAGCCGAATCTTTGATGATGTTTAATGTTTCTTTTTGGCCAAAAACACTGTCTAGGAGAAAATAAGATGAATTTTATCTCTAAAAACACTCATCTCTACAGCTGTGGTCTGTCCCTCTCATTTTAAACATCTTCAACTTCCTGTATCCTGTAATGCAGTGTAGTTATCTGCATGCATCCTGATGAACTCGCAGCCACATAGAGAAATGCACATACTCATTTTGAAGTGCCAGGCAGTCAGACTGCTGCATGTGAAACATGGGAAATGTTTTTTTTTTTTCTTTACTCACAGTTTCTTTACTTCATTTCAAGAAATGAGTCATAGTTAATGTAAAGTTGAACAGTCAGAACACACAGATGAAAGTTACTACTGAAAGACAGGATTAGCCTGACACTACTGTTTCTTATCTTTTGAACTGAGTCCTGGTGTAATTTAGTTTTAAGTATCCCCCCCCCCCCATTATTTCTATTCTTTTATATATTTATGGTATGTAAAGCTGTATTATTTATGTCTTTTGGTTTTAGATATTCACACGGCTGTTATTCTTTAGACCTTGCACATCTTATTTAAAATGAAGTTACCTTATTTTAGCAGTAGTCTTATGGATGAATGTCTGATAGGCCATTTGTAATTCGCACTGTCATTTTTGTCACTTATTCAGAATAGGCAAAGCTATTGAAATAGCTTTAAGGATGTGATCTGATTGTTTAAAAAATGGGGTCAGATTTAATGGATTACAACATGTACTTACATGCTGGTTTACCAGACTTATAAGCATCTCTTTATCACAAGTGCAGTTTTCTCATAGAAAACACTTTCAGTATACAAACGTGTTGAAGGAATCTGCTTAGCAACTACATAAGCTTATAAAATAAGACTAGTGAGTGCATGGCAAGATGTGAGGGAATCACATTTTTTAATTCTCCTTGTCCATCAAGCATATCCAATGTAAATGTTTGCATGATATATTGTACTGAATATGCTGAGGAGTCTTATTCTTGTTTCTCACAGGAAGTGCAGTAGCAGCTCTGAGTAGTGTTATATTTCACTGTAAACGTTTGTCTATTCTCTCCACAAATGTTTAGTATCACGGTTTAATCTCAGATTAATGTATTTTCTTAGTAAATGTAGCCCTTCAGGTTTAAATAAA

Function

symbol description
lmbrd2b Predicted to be involved in adrenergic receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human LMBRD2 (LMBR1 domain containing 2).
lmbrd2 Involved in adrenergic receptor signaling pathway. Located in membrane.

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06276720_06284605.mRNA True 3913 mRNA 0.42 18 6275595 6285152

Neighbor

gene id symbol gene type direction distance location
CI01000006_06272106_06273111 CAPSL, CAPSLB coding downstream 2484 6272071 ~ 6273111 (-)
CI01000006_06261946_06262932 NA coding downstream 12617 6261556 ~ 6262978 (-)
CI01000006_06194768_06199541 CHEK1 coding downstream 76054 6194494 ~ 6199541 (-)
CI01000006_06154160_06156372 NA coding downstream 119223 6154098 ~ 6156372 (-)
CI01000006_06150156_06150788 NA coding downstream 124654 6149792 ~ 6150941 (-)
CI01000006_06309877_06316645 NADK2 coding upstream 24127 6309279 ~ 6316645 (-)
CI01000006_06334522_06363794 MYO7A, MYO7AB coding upstream 48587 6333739 ~ 6366270 (-)
CI01000006_06382586_06409914 CAPN5B, CAPN5, CAPN5A coding upstream 96672 6381824 ~ 6409914 (-)
CI01000006_06418196_06429736 CUL5B, CUL5, CUL5A coding upstream 132856 6418008 ~ 6430813 (-)
CI01000006_06456792_06551677 GRIA4, GRIA4A, GRIA4B coding upstream 171640 6456792 ~ 6551677 (-)
G44568 NA non-coding downstream 9688 6264944 ~ 6265907 (-)
G44570 NA non-coding downstream 70179 6205064 ~ 6205416 (-)
G44557 NA non-coding downstream 82284 6193017 ~ 6193311 (-)
G44552 NA non-coding downstream 88575 6185728 ~ 6187020 (-)
G44590 NA non-coding upstream 7297 6292449 ~ 6297070 (-)
G44606 NA non-coding upstream 12388 6297540 ~ 6297862 (-)
G44587 NA non-coding upstream 160313 6445465 ~ 6450083 (-)
G44641 NA non-coding upstream 298340 6583492 ~ 6587138 (-)
CI01000006_04560607_04560993 NA other downstream 1713527 4559509 ~ 4562068 (-)
G43549 NA other downstream 1920167 4352510 ~ 4355428 (-)
G43102 NA other downstream 3341611 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 3649409 2624436 ~ 2626776 (-)
G42934 NA other downstream 3693389 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 688072 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 1217993 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 4197704 10453613 ~ 10484006 (-)
G47658 NA other upstream 4745759 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 5365211 11650363 ~ 11654424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location