CI01000006_06194768_06199541 (CHEK1)


Basic Information

Item Value
gene id CI01000006_06194768_06199541
gene name CHEK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6194494 ~ 6199541 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06194768_06199541.mRNA
ATCAGATCATGTCTGTGCCTTTTGTTAAAGACTGGGATGTGGTACAAACCCTTGGAGAGGGGGCGTACGGAGAGGTGCGACTGCTTGTCAACAAGAAGACAGAAGAAGCTGTGGCGGTCAAAGTTGTGGACATGGCAAAGGCCAAGGATTGTATAGAGAATGTGAAGAAGGAGGTTTGCATATGCAAGATACTCTCACACCCCAACATCGTACGTTTCTTTGGGCACAGGAGTGAGGGGACGACACAGTACATCTTCTTGGAGTACTGTAGTGGAGGAGAGCTTTTTGACCGAATCGAACCAGATGTTGGGATGCCAGAAAAGGAGGCGCACAGGTTTTTTCAGCAGTTAATAGCTGGTGTGGAATATCTTCACAGCATTGGGATAACACACCGTGACATAAAACCTGAGAATATTCTTCTTGATGATAAAGATAATCTGAAGATCTCTGATTTTGGACTGGCTACCATGTTCCGTCACCGTGGTCGAGAGCGGGCGCTGACTCGTTTGTGTGGCACTCTACCCTATGTTGCCCCCGAGCTGATGTCACGCTCGGCGTTCCACGCTCAACCTGCGGACACTTGGGCTTGTGGTATTGTGCTCACTGCAATGTTAGCCGGAGAGTTACCATGGGACCAGCCGAGCGAAAACTGTCAGGAATATTTAGATTGGCTGGAGAAGAAGATCTACCTCACACCATGGAAGAAAATTGATGCTGTGCCCCTGAGTCTGCTATCCAAGATATTACTGCATAATCCAGAGGACAGGTTCACCATTCCTGAAATTAAGAAACATCGTTGGTTTAGCAGAAGTTTCAAATCAGCAGTAAAACGACAGAGTGACACACCAGTAACCAAGATGCATCGGGCTGACTCAGAACTCGCACAACTGAGACGAAAAAACAGTGATGACAGAGCACAGATCTCCAGCTCTCAGCCTGAGCCGCAGGGATTGTGGGAACAGAAGGAGGTTACAGTGCATACAGATATCAGTGTCAGCTTTTCGCAGCCTACCTGTCCTGACCACATGTTGCTGGGCACCCAACTGCTTGGCACACCGGGTGCCAGCCAGAACCCATGGCAGCGGTTGGTGAGAAGGATGACCAGGTTCTTTACCACGGTGAAGGCAGAGCCGTCTTGCATTGCTCTCCGTGATGCCTGCATTGCTATGGGTCACACATGGAAACAGAGCTGCACCAATCAGGCGACAGTGTCCACAATGGATCGCCGCAATAATAAGCTGATCTTCATAGTGCACTTCCTGGAAATGGAGGAACGCATTTTAGTAGATTTCCGACTGTCAAAGGGGGACGGTTTGGAATTCAAGAGAATATTCCTGAAACTGAAACTGAAGCTGTCTGACATTATTAGTAACCAAAAGGTTTTGCCTTTGAATTGATGTGTGTCTACATTTTAACATGCAAAGTCTGCATTCACACATGCGTACACACACTCACACTAAGTTGTTTTATGATTGTGGAACATGTTTGGATTTGTATATTTGTAGTTGTATATGTCTGTTTCTCTGATCAGTGAGTGAAGGAGTAAGGAGAAACTGTCAAGTTTAGTTCATCTGTTCATTTGTGTTCCGTTACTGTGAAGAAGAGGGTTTGTTTTCTGCCCCTTAAAAAGATGCAAGTAAAATTGAGCATGAAAACAAAATTTAAAATAAA

Function

symbol description
chek1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within intrinsic apoptotic signaling pathway in response to DNA damage; mitotic G2 DNA damage checkpoint signaling; and protein phosphorylation. Predicted to be active in nucleus. Is expressed in forebrain; hindbrain; immature eye; and midbrain. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human CHEK1 (checkpoint kinase 1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K02216 CHEK1; serine/threonine-protein kinase CHEK1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06194768_06199541.mRNA True 1671 mRNA 0.46 12 6194494 6199541

Neighbor

gene id symbol gene type direction distance location
CI01000006_06154160_06156372 NA coding downstream 38122 6154098 ~ 6156372 (-)
CI01000006_06150156_06150788 NA coding downstream 43553 6149792 ~ 6150941 (-)
CI01000006_06113827_06119446 NA coding downstream 73195 6113684 ~ 6121299 (-)
CI01000006_06061727_06090026 ARHGAP42A, ARHGAP42 coding downstream 104468 6061727 ~ 6090026 (-)
CI01000006_06032635_06035821 NA coding downstream 158673 6031720 ~ 6035821 (-)
CI01000006_06261946_06262932 NA coding upstream 62229 6261556 ~ 6262978 (-)
CI01000006_06272106_06273111 CAPSL, CAPSLB coding upstream 72530 6272071 ~ 6273111 (-)
CI01000006_06276720_06284605 LMBRD2B, LMBRD2 coding upstream 76054 6275595 ~ 6285152 (-)
CI01000006_06309877_06316645 NADK2 coding upstream 109738 6309279 ~ 6316645 (-)
CI01000006_06334522_06363794 MYO7A, MYO7AB coding upstream 134198 6333739 ~ 6366270 (-)
G44557 NA non-coding downstream 1183 6193017 ~ 6193311 (-)
G44552 NA non-coding downstream 7474 6185728 ~ 6187020 (-)
G44415 NA non-coding downstream 51405 6128337 ~ 6143089 (-)
G44536 NA non-coding downstream 83658 6110602 ~ 6110836 (-)
G44570 NA non-coding upstream 5523 6205064 ~ 6205416 (-)
G44568 NA non-coding upstream 65403 6264944 ~ 6265907 (-)
G44590 NA non-coding upstream 92908 6292449 ~ 6297070 (-)
G44606 NA non-coding upstream 97999 6297540 ~ 6297862 (-)
CI01000006_04560607_04560993 NA other downstream 1632426 4559509 ~ 4562068 (-)
G43549 NA other downstream 1839066 4352510 ~ 4355428 (-)
G43102 NA other downstream 3260510 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 3568308 2624436 ~ 2626776 (-)
G42934 NA other downstream 3612288 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 773683 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 1303604 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 4283315 10453613 ~ 10484006 (-)
G47658 NA other upstream 4831370 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 5450822 11650363 ~ 11654424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018902 chek1 coding NC_007132.7 CM002905.2 22558187 ~ 22565170 (+)