CI01000006_06418196_06429736 (CUL5B, CUL5, CUL5A)


Basic Information

Item Value
gene id CI01000006_06418196_06429736
gene name CUL5B, CUL5, CUL5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6418008 ~ 6430813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06418196_06429736.mRNA
AGAAGTTCGCAACCCTAGGAACTACTCAGAGCACGTGGCGACCTGTCAGGCACTTTAAACAATATTGAATAGACCAAACAGTTTCTTGATCACAGAAACCAAATTAGGGTGAACTCATTAATAGAACAGGAAGTATTATCTTGCGTTTTAGTCTTTCTAAAAGTTTTGTAGCTTGATAGCGCAAAGCAAACCAGCAATCTCACTACCTTCTTCAGTGTTAGCCATGCTATTAGCTAGGCTAAAAAACACAACGTCACGTGTTTACAAGTAAAAGAATAAAACCAAGGGTCTGTTAAATACCTGAATGTAACGATTCCGGCATGTCCGTAATGTACGAACAATCAGCTAAAATCCAACAGTATCATCTTTCATTGAAAGCGAGAAGTCATAAATGCGCTCGGCCAACTAAAGGCCCCGCCCATTTTCCCAAACAACCAATAGGAGCTAAATGTACTTCCTCTTTATTGAATTGTGACCAATGGCAGCACACACGGAAGTTGTGTGCAATGGGAATGTATTAGGTATCCTAAATCGATCAGAAATTTACTCAAGTGGTTTTAAAGATTAATAGTCTGTTAATGGACATGTTGTAATAATAACCATAATGTAACTGAGCTGTTACATTTATTTCTAGCGGTGATTAATAAGAATTGTGATTTCAAAACGTCTATACAGTTGCAGCTGGTCGGCCTTCAGACTGTTATGGGAAAGAACTCCTCGTGTCCTTCGATACGGCCTGCTGGCCCCTTATTATCACCATTATTACGATTCAGAGATATTACTCCTTAGTATAATTTGGGTGAGAACTAAACCCTCAAGGACAGAACAATTCGTTTGACACTGCTAGGTTAAATGTGACTATTCCTGTGAAATATTTATCACACTGGCTCTACTTAATAGCATGATGATAAAAACAATCAAAATAAATTCTAGTTTGTGTAAATTAGTATGTACAGAATAGACAAAAGCTATACAGCAGTATCAGACAGGGCTGCTGATGCAGTCTGTCTCAATGCTCCCTAGCAACCAAACCTCCTCAAACATCGCGAGATTGCACGGGGACCAAGTTGAAGAAACATGGCGTCTCATTTACTGAAGAATAAAGGCTCCCTGCAGTTTGAAGACAAATGGGATTTGATGCGGCCCATTGTTTTGAAGCTACTCCGTCAGGAGTCAGTTACTAAGCAGCAGTGGTTCGATTTGTTCTCAGACGTCCATGCAGTGTGTTTATGGGACGACAAAGGCCCGGCAAAGATTCACCAGGCACTAAAAGAAGATATCCTAGATTTCATCAAGCAAGCACAGGCACGAGTACTCAGTCACCAGGACGACACGGCTTTGCTTAAAGCCTACATTGTGGAGTGGAGGAAGTTCTTCACACAGTGTGATATTCTACCTAAGCCTTTCTGCAAGTTAGAGATCACCCTGCTGGGCAACCAGGGGAGCAATAAGAAGTCCAGCGTTGAAGACAGTATTGTTAGAAAGCTTATGCTAGACACATGGAACGAGTCTATATTCTGTAACATAAAGAACCGACTCCAGGACAGTGCTATGAAACTGGTCCATGCTGAGAGATTAGGAGAAGCGTTCGACTCGCAGCTTGTCATTGGAGTGCGCGAGTCATATGTGAATTTGTGTTCCAACACTGATGACAAGCTCCAGATCTATAGAGAGAATTTTGAGAAGGCATATCTAGATTCTACAGAGAGGTTCTACAAGACACAAGCACCTTCCTATCTGCAGCAGAACGGCGTTCAGAACTATATGAAATATGCAGATGGCAAGTTAAGAGAAGAGGAGAAGCGTGCACTTCGATATCTGGAAACCAGACGTGAATGTAACTCCGTCCAGGCACTAATGGAGTGTTGTGTGAATGCGTTGGTGACGTCGTTCAAAGAGACAATCCTAGCCGAATGTCCAGGAATGATCAAGCGGAACGAGACAGAGAGTGAGTACGGCAGGAGCTCTGGCACCAAAGGCTCAGCAAGTTCAGAGCTGCACCTCATGTTCTCGCTGATGGATAAAGTGCCCAGTGGGATTGAGCCTATGCTGAAGGACCTGGAGGATCATATCATGAACGCAGGTCTGGCTGATATGGTGGCTTCAGCGGAGACCATTACCTCAGACTCTGAAAAATATGTCGAGCAACTCCTAACATTGTTTAACCGCTTTAGTAAATTAGTTAAGGAAGCATTCCAAGATGACCCACGTTTCCTAACATCCAGGGATAAAGCATACAAAGCAGTAGTGAATGACGCAACAATATTTAAACTAGAGCTCCCTCTAAAACAGAAAGGTGTGGGTCTGAAAACACAACCAGAGTCCAAATGTCCAGAGCTGCTGGCCAACTACTGTGATATGCTCCTTAGAAAGACTCCACTGAGCAAGAAACTCACCTCAGAGGAAATAGAGGCCAAGCTGAAGGAAGTGCTCTTGGTTCTAAAATATGTTCAGAACAAAGATGTCTTCATGAGGTACCACAAAGCGCACTTGACGCGCAGGCTTATTCTTGACATTTCTGCAGACAGTGAGATTGAAGAGAACATGGTAGAGTGGCTCAGGGAGGTTGGAATGCCAGCAGATTACGTGAACAAGCTTGCCAGAATGTTCCAGGACATCAAAGTATCAGAAGACTTAAATCAATCCTTCAAAGAAATGCATAAACACAACAAACTTGCATTACCAGCCGACTCTGTCAATATAAAGATCTTAAATGCGGGAGCATGGTCTCGGAGTTCAGAGAAAGTGTTTGTATCATTGCCCACCGAACTAGAAGATCTTATTCCTGAAGTCGAAGAGTTTTACAAGAAAAATCACAGTGGCAGAAAATTACACTGGCACCATCTGATGTCCAATGGAATTATCACATTCAAGAATGAAGTTGGACAGTATGATTTAGAAGTCACGACATTCCAGTTAGCTGTGTTGTTTGCCTGGAACCAAAGGCCAAGAGAGAGGATCAGCTTTGAGAATCTGAAACTAGCCACGGAACTTCCAGACGCTGAGCTGCGCCGGACACTCTGGTCTCTTGTAGCTTTCCCCAAACTAAAGCGTCAGGTGCTGTCATATGAACCTGTGGTGGGCTCTCCTAAAGACTTTGCAGAAGGCACTGTATTTTACATCAATCAAGAGTTTTCTTTAATAAAAAACTCAAAGGTCCAGAAAAGAGGCAAGATCAATTTGATTGGTCGATTACAACTCACCACAGAGAGAATGCGTGAAGAAGAAAATGAGGGCATAGTGCAACTTAGGATATTACGCACACAGGAAGCTATCATTCAGATTATGAAGATGAGGAAGAGGATCAGCAATGCCCAGCTTCAGACGGAGCTGGTGGAGATCCTAAAGAACATGTTTCTACCCCAGAAAAAGATGATCAAAGAGCAGATTGAGTGGCTGATAGAACAAAAGTACATCAAACGGGATGAGACGGACATTAACACATTTATCTACATGGCGTAGCCGACCACGCCCAGTGCACTCTGGGACGTTTTTTTAGACACTAGTGCTCCTTTGGAGGATTCCATATCTGATTTCAGCTCATTGCCCAGCCTGGCCTGCTGGGTGTCTGACTAGATCTCAACACACACCACGCTGAGAAATTTCTGACAAATCCCTGCCTTACTTCATAAATCTATGAAATGAATAAA

Function

symbol description
cul5b Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be part of Cul5-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Orthologous to human CUL5 (cullin 5).
cul5a Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be part of Cul5-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Orthologous to human CUL5 (cullin 5).
cul5 Enables ubiquitin protein ligase binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within cerebral cortex radially oriented cell migration and radial glia guided migration of Purkinje cell. Located in site of DNA damage. Part of Cul5-RING ubiquitin ligase complex.

GO:

id name namespace
GO:0008285 negative regulation of cell population proliferation biological_process

KEGG:

id description
K10612 CUL5; cullin 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06418196_06429736.mRNA True 3650 mRNA 0.43 19 6418008 6430813

Neighbor

gene id symbol gene type direction distance location
CI01000006_06382586_06409914 CAPN5B, CAPN5, CAPN5A coding downstream 8094 6381824 ~ 6409914 (-)
CI01000006_06334522_06363794 MYO7A, MYO7AB coding downstream 51738 6333739 ~ 6366270 (-)
CI01000006_06309877_06316645 NADK2 coding downstream 101363 6309279 ~ 6316645 (-)
CI01000006_06276720_06284605 LMBRD2B, LMBRD2 coding downstream 132856 6275595 ~ 6285152 (-)
CI01000006_06272106_06273111 CAPSL, CAPSLB coding downstream 144897 6272071 ~ 6273111 (-)
CI01000006_06456792_06551677 GRIA4, GRIA4A, GRIA4B coding upstream 25979 6456792 ~ 6551677 (-)
CI01000006_06604787_06615427 NEU3.3, NEU3.4 coding upstream 173334 6604145 ~ 6617712 (-)
CI01000006_06641630_06642872 NEU3.3 coding upstream 209926 6640739 ~ 6644373 (-)
CI01000006_06649164_06650940 NEU3.1 coding upstream 218156 6648969 ~ 6650940 (-)
CI01000006_06679176_06684406 POLD3 coding upstream 248363 6679176 ~ 6685603 (-)
G44606 NA non-coding downstream 120146 6297540 ~ 6297862 (-)
G44590 NA non-coding downstream 120938 6292449 ~ 6297070 (-)
G44568 NA non-coding downstream 152101 6264944 ~ 6265907 (-)
CI01000006_06261946_06262932 NA non-coding downstream 155150 6261556 ~ 6262978 (-)
G44570 NA non-coding downstream 212592 6205064 ~ 6205416 (-)
G44587 NA non-coding upstream 14652 6445465 ~ 6450083 (-)
G44641 NA non-coding upstream 152679 6583492 ~ 6587138 (-)
G44677 NA non-coding upstream 256559 6687372 ~ 6687596 (-)
CI01000006_04560607_04560993 NA other downstream 1855940 4559509 ~ 4562068 (-)
G43549 NA other downstream 2062580 4352510 ~ 4355428 (-)
G43102 NA other downstream 3484024 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 3791822 2624436 ~ 2626776 (-)
G42934 NA other downstream 3835802 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 542411 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 1072332 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 4052043 10453613 ~ 10484006 (-)
G47658 NA other upstream 4600098 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 5219550 11650363 ~ 11654424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location