G140297


Basic Information

Item Value
gene id G140297
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10198052 ~ 10201839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189923
CTTTCTCCCACTCTGACACTGAAGGGGTCGCCTGGGGTGCGCCCTAAAATCACTATAAAAGGAATGCTACACACACTCagaacccaacacacactcagaacCCGACACACACTCAGAGAGCAAACGGGTAAGAAAGTCgtgactttctttctctctctctctctctatctctgttacCTATAGTCTCTGTCTCTTAGTTACatatattctctctctctctctctccctctctgttacCTATAGTCTCTGTCTCTTAGTTACatatattctttctctctctctctccctctctgttaaCGAGGAGCTCCTGTTAGTGTAAACATCTTCATTACACCAAACCATTGCTTTACAGCAGGGGGAACATGTGTGAAATTAACCTTATGTAATCtttgtgtgtgtgtgtgtgtgtgtgtttccagtgCTGATGGAACAGTCAGCAGTATTGAAGGAACAGCTAAAGCCAAAGATCCATCTGAACCAGCCAAGCTGGAGGTCAGCTTCTTTGAAGGAGTTCCTCCTGGTAATTACTGGGTTTTATCCACCGACTACGATAATTACACGCTGGTTTACGGCTGCACCAACTACCTGAACCTCTTTCATGTGGAGTTTGCCTGGATCTTGAGTCGTGGCCGATCCCTCCCGAAGGAAACTCTAGTTGAGCTGCAGGACATTCTGATTTCCAACGGCATCAAGATCGACACACTGACCTCCACTGACCAGGAGCTGAAGCGCTGCAGTGCCATGCCACAGTGAAGCCGGATGAAGATCTgctgtgtttaattatttatttatttgcttattaagTCTATTAAGGGCTAAATTATTCCGTGTGTGATATGAAACTAATGCATGAGTTCTGGAGTTCTGGAGTGTTCAGATATTTGCAGTTTAAGTGGTTAATTAATGTCCATCTtcttctatatttatattttatgtggaaAGGAGGAAATGTGTTTAGTAGAAACGTTCTGGTGTTCCTCTTTCACTTCAATAAACATTAAAGTACAACACAACCCAGGATGTCTTCACTGCTGGTCTCTTATTCCATCCACCCTTTCCATTGTCAATAAACACTTTATTCTTCTACAGCAGTTGAATTCTC

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189923 True 1102 lncRNA 0.43 5 10198052 10201839

Neighbor

gene id symbol gene type direction distance location
copa copa,LOC106600386 coding upstream 10365 10172944 ~ 10187687 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding upstream 28355 10163810 ~ 10169697 (+)
LOC103041077 slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468 coding upstream 50325 10130895 ~ 10147727 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107733878 coding upstream 293938 9897076 ~ 9904114 (+)
LOC103036973 LOC108430268 coding upstream 309475 9884209 ~ 9888577 (+)
samd7 samd7 coding downstream 17734 10219573 ~ 10234260 (+)
sec62 sec62,LOC107738178,LOC102781860 coding downstream 33883 10235722 ~ 10246002 (+)
gpr160 NA coding downstream 70175 10272014 ~ 10276220 (+)
phc3 NA coding downstream 149057 10350896 ~ 10369990 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 283883 10485722 ~ 10524437 (+)
G140274 NA non-coding upstream 42004 10098168 ~ 10156048 (+)
LOC103034722 NA non-coding upstream 68008 10125320 ~ 10130044 (+)
G140255 NA non-coding upstream 255773 9941028 ~ 9942279 (+)
G140251 NA non-coding upstream 271476 9926309 ~ 9926576 (+)
G140249 NA non-coding upstream 272009 9925133 ~ 9926043 (+)
G140305 NA non-coding downstream 75038 10276877 ~ 10278511 (+)
G140331 NA non-coding downstream 105581 10307420 ~ 10307715 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding downstream 130989 10332828 ~ 10335069 (+)
G140391 NA non-coding downstream 159152 10360991 ~ 10361377 (+)
G140392 NA non-coding downstream 169613 10371452 ~ 10374169 (+)
G140262 NA other upstream 203986 9993586 ~ 9994066 (+)
G140258 NA other upstream 207756 9989918 ~ 9990296 (+)
G140103 NA other upstream 452697 9743698 ~ 9745355 (+)
G140062 NA other upstream 657242 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 974071 9220274 ~ 9223981 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 109261 10311100 ~ 10345471 (+)
G140402 NA other downstream 193681 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 225427 10427266 ~ 10444540 (+)
G140520 NA other downstream 596706 10798545 ~ 10798891 (+)
G140659 NA other downstream 1178259 11380098 ~ 11383505 (+)

Expression


Co-expression Network